Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0852 ATGGCTGCCACTGCTTCCAACTCTCTCCTTTGCACCAAAACGCTAGTCCCAACCCTCCCTTCTTCCTCCAACAACCTCAACAACAGCAACCAATGCTCCTCCTTTCCCAGGCCCAGGCCCAGGCCCATCCAGGCCCTGAACAACTCCGTGACTGTAATAACCGACAAGAAGTGCGAGGCAAAGTGGGTGGTGGACAGCTGGAAGTCCAAAAAGGCTCTTCAACTCCCGGAATACCCGGAGCAAGAGAAGCTCCAGTCGGTGCTCAAGAGCCTGGAAGCCTTCCCTCCGATTGTGTTTGCCGGAGAGGCCCGCAACCTCGAGGAGCGCCTCGCCCAGGCTTCCATGGGAAACGCGTTCCTCCTCCAGGGCGGAGACTGCGCTGAGAGCTTCAAGGAGTTTCATGCAAATAACATTCGTGACACCTTCAGACTCCTCCTCCAAATGAGTGTCGTCACCATGTTCGGAGCCCAAGTGCCTGTCATTAAGGTGGGAAGAATGGCGGGTCAATTTGCGAAACCGAGATCGGAAGCGTTTGAGGAGAAAGACGGGGTGAAACTCCCAAGTTACAGAGGAGATAATGTGAATGGAGATGCTTTCGAGGAGAAAACGAGAATTCCTGATCCTGAAAGAATGATAAGATCATACAGCCAATCTGCTGCGACTCTCAATCTTCTGAGAGCATTTGCGACGGGAGGATATGCTGCTATGCAAAGGGTTAGCCAATGGAATTTGGACTTCACGCAACACAGCGAGCAAGGAGACAGGTACCTAGAGCTTGCTCGCCGAATTGATGAGACCCTTGGGTTCATGGCTGCTGCTGGCCTCACAATGGATCATCCTATAATGAAAACAACCGAGTTTTGGACTTCACATGAATGTTTGTTATTGCCCTATGAACAATCACTCACTAGGTTGGATTCAACTTCTGGTCTCTACTATGACTGCTCCGCCCATATGCTTTGGGTTGGTGAACGGACTAGACAGCTCGATGGTGCTCATGTTGAATTTCTAAGAGGGATTGCTAATCCCCTTGGAATTAAGGTAAGTGATAAGATCGATCCAAAGGAGCTTATTAGACTAATAGAGATCTTGAATCCCCAGAACAAGCCAGGGAGAATAACTGTGATAACGAGGATGGGAGCTGAAAATACGAGGGCGAAACTTCCACATCTGATCAGGGGAGTACGCAATGCGGGACTAATTGTATGTTGGGTCAGTGATCCTATGCATGGAAACACCATAAAAGCTCCCTGTGGACTCAAAACTCGCCCCTTCCATTCCATCATGGAGGAGGTGAAATCATTCTTCGACGTGCATGAACAAGAAGGAAGCCACCCAGGTGGGGTTCATCTAGAGATGACAGGTCAGAATGTGACTGAGTGCATTGGTGGGTCAAAGATGGTCACCTTTGATGATCTCAGCTCACGCTACAACACTCACTGTGACCCCAGGCTTAATGCTTCACAGTCTCTTGAGCTTGCTTTCATCATTTCTGAACGCCTCAAAAAGAATAGGATCGGGTCAAATCTGAACAATGTTTTTTCTCTATAG 1551 0.4919 MAATASNSLLCTKTLVPTLPSSSNNLNNSNQCSSFPRPRPRPIQALNNSVTVITDKKCEAKWVVDSWKSKKALQLPEYPEQEKLQSVLKSLEAFPPIVFAGEARNLEERLAQASMGNAFLLQGGDCAESFKEFHANNIRDTFRLLLQMSVVTMFGAQVPVIKVGRMAGQFAKPRSEAFEEKDGVKLPSYRGDNVNGDAFEEKTRIPDPERMIRSYSQSAATLNLLRAFATGGYAAMQRVSQWNLDFTQHSEQGDRYLELARRIDETLGFMAAAGLTMDHPIMKTTEFWTSHECLLLPYEQSLTRLDSTSGLYYDCSAHMLWVGERTRQLDGAHVEFLRGIANPLGIKVSDKIDPKELIRLIEILNPQNKPGRITVITRMGAENTRAKLPHLIRGVRNAGLIVCWVSDPMHGNTIKAPCGLKTRPFHSIMEEVKSFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSKMVTFDDLSSRYNTHCDPRLNASQSLELAFIISERLKKNRIGSNLNNVFSL* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0852 516 Pfam Class-II DAHP synthetase family 62 498 IPR002480 GO:0003849|GO:0009073
Gso6g0852 516 TIGRFAM DAHP_synth_II: 3-deoxy-7-phosphoheptulonate synthase 62 504 IPR002480 GO:0003849|GO:0009073
Gso6g0852 516 PANTHER PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE 1, 2 47 510 IPR002480 GO:0003849|GO:0009073
Gso6g0852 516 Gene3D Aldolase class I 248 503 IPR013785 -
Gso6g0852 516 SUPERFAMILY Aldolase 54 502 - -
Gso6g0852 516 PANTHER PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE 2, CHLOROPLASTIC 47 510 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0852 Gso-Chr6 8108685 8113509 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0852 K01626 - gmx:100809016 1033.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0855 4 9142858 9147145 Gso6g0852 6 8108685 8113509 GST
Gso14g1483 14 46015708 46020314 Gso6g0852 6 8108685 8113509 PCT
Gso2g1777 2 41463345 41467937 Gso6g0852 6 8108685 8113509 PCT
Gso6g0852 6 8108685 8113509 Gso14g1483 14 46015708 46020314 PCT
Gso6g0852 6 8108685 8113509 Gso2g1777 2 41463345 41467937 PCT