Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0855 ATGATTAACAACAAATTTGCAATCAATCATGCAAAAAATCTTGTTGCACATGGGAGAAGTAAACACATAGAAACAAGGTTCCATTTCCTAAGAGAGCAAGTGAAGAAAAGGATAATCGAAGTGACCCATTGCCCCACTCAAGATCAACCAGCTAATGTGCTTACCAAACCAGTGAGAGTGGATCGGTTTTTGAAGACCAATGGTGAACTAGGGGTGGGAAGAATGATGGGTCAATTTGCGAAATTGAGATCCAAAGAGATGAAGGAGACAAATGGGATGAAACTGTCGAGTTACAAGGGAGATAATGTGAATGGAGATGCTTTCGAGGAGAAAATGAGAATTCCTGATCCTGAAAGGCTGATCAGAGCGTACAACAAATCTGTTGTGACTCTAAGTCTTCTGAAGGCATTTGCTATGGGATGCCAATGGAATTTGGACTTCTCACAACACAACGAGCAAGGAGACAAGTACCTAGAGCTTGCTCACCGAATTGATAACACCCTTGCATTCATGGCTGCTGCAGGCCTCACGGTGGACCATCCTATAATGAAAACAACTGAGTTTTGGACTTCACATGAATGTTTGTTACTGCCCTATGAGCAATCACTCACTAGGTTGGATTCAACTTCTGGTCTCTACTATGACTGCTCTGCCCATATGCTTTGGGTTGGGGAACGGACCAGGCAGCTCGATGGTGCCCATGTTGAGTTTCTAAGAGGAGTTATAATCCCCTTAGCATTAAGGCTTAATGCTTCACAATCTCTTGAGCTGGCTTTCAACATTTCTGAACGCCTCAAAAAGAATAGGATCGGATCTGATCTTAACAGTATCTTTTCTCTGTAG 843 0.4282 MINNKFAINHAKNLVAHGRSKHIETRFHFLREQVKKRIIEVTHCPTQDQPANVLTKPVRVDRFLKTNGELGVGRMMGQFAKLRSKEMKETNGMKLSSYKGDNVNGDAFEEKMRIPDPERLIRAYNKSVVTLSLLKAFAMGCQWNLDFSQHNEQGDKYLELAHRIDNTLAFMAAAGLTVDHPIMKTTEFWTSHECLLLPYEQSLTRLDSTSGLYYDCSAHMLWVGERTRQLDGAHVEFLRGVIIPLALRLNASQSLELAFNISERLKKNRIGSDLNSIFSL* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0855 280 CDD RNase_HI_RT_Ty1 4 58 - -
Gso4g0855 280 PANTHER PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE 1, 2 248 273 IPR002480 GO:0003849|GO:0009073
Gso4g0855 280 PANTHER PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE 1, 2 71 247 IPR002480 GO:0003849|GO:0009073
Gso4g0855 280 SUPERFAMILY Aldolase 71 269 - -
Gso4g0855 280 Gene3D Aldolase class I 44 270 IPR013785 -
Gso4g0855 280 PANTHER PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE 2, CHLOROPLASTIC 248 273 - -
Gso4g0855 280 PANTHER PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE 2, CHLOROPLASTIC 71 247 - -
Gso4g0855 280 Pfam Class-II DAHP synthetase family 72 268 IPR002480 GO:0003849|GO:0009073
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0855 Gso-Chr4 9142858 9147145 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0855 K01626 - gmx:100778505 561.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0855 4 9142858 9147145 Gso4g0855 4 9142858 9147145 ECH
Gso4g0855 4 9142858 9147145 Gso6g0852 6 8108685 8113509 GST
Gso14g1483 14 46015708 46020314 Gso4g0855 4 9142858 9147145 PCT
Gso2g1777 2 41463345 41467937 Gso4g0855 4 9142858 9147145 PCT
Gso4g0855 4 9142858 9147145 Gso14g1483 14 46015708 46020314 PCT
Gso4g0855 4 9142858 9147145 Gso2g1777 2 41463345 41467937 PCT