Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0635 ATGAGTAGACCGACAACACGGAGTAAAAATAAAAGACAGAAACAAGGGGATGATGGCAACGGCACTGGCGAAATATGGAGGAAAATTCATAATACAGGTGTGGTAACTGAGGATGATATGAATCAATTGTATATGATTTGGAAGCCAGTTTGTTCAGGCTGCCGTGTCAATAATAAAGATAACCCAAATTGCTTATGTGCATTGGTTCCACCTCCAAATGGAGCCCGGAAGTCTGGCTTATGGCAAAAGATGTCAGATATTGTTGAGAGTCTTGGCCATGACCCAACCAAGGATCTTCGAGCTTCTGCTGATTCTCCTGCAGGTCTCACGAATCTTGGTGCAACATGCTATGCCAACAGTATACTCCAGTGCTTGTACATGAATAAATCTTTCCGAGAAGGCATGTTTTCTGTAGAACGAGATGTTTTACATCAACAGCCTGTGCTAGATCAGCTGGCTCGACTTTTTGTGCAGTTGCATATTAGCAAAATGGCTTTCATAGATTCTTCTCCATTTGTAAAAACTCTGGAATTAGATAATGGAGTTCAGCAGGATAGCCATGAGTTCCTGACATTGCTTCTCTCTTTGCTTGAGCGTTGTCTGAGCCACTCCAAAGTGCCCAAGGCAAGAACAATAGTTCAAGATCTTTTCCGGGGAAGTGTTTCTCATGTGACGACGTGCTCAAAATGTGGAAGAGACTCTGAAGCTTCTTCCAAAATGGAAGATTTCTATGAATTGGAGTTGAATGTCAAAGGATTGAAAAGTTTAGATGGGAGCCTAGATGAATATCTCACTGTTGAAGAGCTTAATGGAGACAATCAATATTTTTGTGAGTCTTGTAAAACAAGAGTTGATGCTACTCGCAGCATCAAGCTGTGTACATTACCCAAAGTACTTAATTTTCAGCTTAAACGTTATGTCTTCCTTCCTAAGACTACAACAAAGAAGAAAATTACTTCTGCATTTTCATTTCCTGCTGAACTTGATATGCGGCATAGAATGTCTGAGTTGTCTCAGTTCAACTTGGTATATGACTTGTCAGCTGTACTGATTCACAAGGGAACTGGTGCTAATAGTGGCCATTACATTGCTCACATCAAGGATGTAAACACTGGACAATGGTGGGAATTTGATGATGAGCATGTTACTAATTTGGGTTTTCATCCATTTGGTGAAGAGTCTTCAAGTTCTACTACTAAATCCATCAAGACTGATGCAATTCATTTTGATAATTCTGAAGCAATGGTAGCTGACAGCAATGGAAATGGTTTAAGTGCTACTCATTCACAATCTTCAAAAGTGGAGACATTTTTGTCTAGTGATGCGTACATGTTGATGTACCATCTTAAACATACAAAAAGTGTTGGTGAAAGTGGGGGTGTAATTTGTGGTGTTAACCATAAAGAAAGAGAGGGTGTTGTAGTTGCTGTGCAAAATGGTGTTCCTCTTCCATCTCATATTTATGATGAGATTCAAAGTTTCAACACCTCATATGATGATGCTTGTCAGCAGTACAATAACAGGAAAGAGTTACAATTGAGTCGTATTAGTGAGAGGAGACAGGAAGTTCGATCTGTTTTAGCTGAAGCTCCTGTGCAATCATTGGAGCAACCATTTTATTGGATTTCTAGTGAATGGCTTCGTCAATGGGCCGACAACATTATTCCAATTCCTCTTGACAACACGTCAGTCCAATGCTCACATGGGAAAGTCCCAGTTTCAAATGTTACCTCAATGAAGCGGTTGTCTGCTAAAGCGTGGGATATGTTGTTCTCCAAGTATGGTGGAGGACCAGCATTGTCTCATGATAACCACTGTCGGGATTGCCTGATTCATGGGGCTATGACAGTGGTGTCAGCTGACACCTATCGGGATAGAAGAGAATCAATGAAGTCACTTGCACGGGATATTCTAGATGGAAACTGCCTAGATGGAAAGTATTACATATCCAGACCATGGTTGCAGCAGTGGTGGAAAAGAAAAGTCCTTGATGCTCCATCTGAAGCTGATGCTGGACCAACAGCAGCCATTAGTTGTCCACATGGTCAATTGATGCCTGAGCAAGCTCCTGGTGCTAAGCGGGTGCTTATTCCTGAGAGCTTTTGGCTCTTCTTATATGAAGATGCTGTTTCTATAACGCCTGATGATCCTTTGGGTGGCCCAACTTTTTCTTCAGATTCTGAAGAGTGTTCCCAATGCAGTAATGAATTATCTGAAGTAGCATGCTTGGAGGACTCCTTGAGATTAGTTAAACAAAAACAACGTCAGAATCATGAGAAATTATTCCAGGCTAAAAGTATGCCACTTTCTATGCACAGCAAGTATTTCTTGGTGCCTTCGTCATGGATTTCAAAATGGAGAAATTACATTAGTCCAACCCTGAAGAATTCAGATAAACCTGAAACTTTAGATGGGGTAATTGATTCAATGTTGTGTGAAAAGCACTCACAGCTGATTGAAAGACCTCCTGAATTGGTTTTCAGACGTGGTGCTATAATCCAGAGGGAATCTTCTGAAGGTTGCTTAACCATTGTATCTGAGAATGATTGGAAATGCTTCTGTGAAGAATGGGGTAGTATTGAGACCAAAGGAATATCAGCAACAATTGATCATGTTAATGATTCAGAGAATGTATTGACTGGATCCAGTGAGGAGATGCTAGTATGCAAGGATCAGTTGAGCACAGCAGATAAAATGAATTTTGAAAATGGGACTGGACAAATTTTAATTAAGACATGTCCTGAGGTTTGTGAGAGTTGCATCGGAGAAAGAAAGAGCTGTGAGCTAATGCAGAAGCTTAACTATTGCAATGAGGACATATGTGTAATTCTTGTTCGTGGTAAGGAGGTACCTAGATCAATATTGGAGGCTTCAAAGGGATTCGTTGAAACAGATCGGCGAGTTTCCAAGCGTTCCCGCAAGACTAAAAATGGGAGTTCAATTAGTCTAAAAGTTTCTGCTTCAACATCTTTATATCAGCTGAAAATGATGATATGGGAATCCTTTGGGGTTGTCAAGGAAAACCAGATACTACATAAAGGTGATAGGATAATTGATAGCGATAATGAATTTGCTACCCTCGCAGATGTGAACATATTTGCTGGAGATCAGGTTATTGTGAGGGACTCTGAGATCCATGAAAATCGAGATATTGCTGATGAGCTTTGCGATGATAAAATGGATCTGCAGCATACCGAGGAAGGGTTCCGAGGAACACTTCTCACAGCAAATGTTTCATCCCAGTTGCAGGGGTATTGA 3258 0.4076 MSRPTTRSKNKRQKQGDDGNGTGEIWRKIHNTGVVTEDDMNQLYMIWKPVCSGCRVNNKDNPNCLCALVPPPNGARKSGLWQKMSDIVESLGHDPTKDLRASADSPAGLTNLGATCYANSILQCLYMNKSFREGMFSVERDVLHQQPVLDQLARLFVQLHISKMAFIDSSPFVKTLELDNGVQQDSHEFLTLLLSLLERCLSHSKVPKARTIVQDLFRGSVSHVTTCSKCGRDSEASSKMEDFYELELNVKGLKSLDGSLDEYLTVEELNGDNQYFCESCKTRVDATRSIKLCTLPKVLNFQLKRYVFLPKTTTKKKITSAFSFPAELDMRHRMSELSQFNLVYDLSAVLIHKGTGANSGHYIAHIKDVNTGQWWEFDDEHVTNLGFHPFGEESSSSTTKSIKTDAIHFDNSEAMVADSNGNGLSATHSQSSKVETFLSSDAYMLMYHLKHTKSVGESGGVICGVNHKEREGVVVAVQNGVPLPSHIYDEIQSFNTSYDDACQQYNNRKELQLSRISERRQEVRSVLAEAPVQSLEQPFYWISSEWLRQWADNIIPIPLDNTSVQCSHGKVPVSNVTSMKRLSAKAWDMLFSKYGGGPALSHDNHCRDCLIHGAMTVVSADTYRDRRESMKSLARDILDGNCLDGKYYISRPWLQQWWKRKVLDAPSEADAGPTAAISCPHGQLMPEQAPGAKRVLIPESFWLFLYEDAVSITPDDPLGGPTFSSDSEECSQCSNELSEVACLEDSLRLVKQKQRQNHEKLFQAKSMPLSMHSKYFLVPSSWISKWRNYISPTLKNSDKPETLDGVIDSMLCEKHSQLIERPPELVFRRGAIIQRESSEGCLTIVSENDWKCFCEEWGSIETKGISATIDHVNDSENVLTGSSEEMLVCKDQLSTADKMNFENGTGQILIKTCPEVCESCIGERKSCELMQKLNYCNEDICVILVRGKEVPRSILEASKGFVETDRRVSKRSRKTKNGSSISLKVSASTSLYQLKMMIWESFGVVKENQILHKGDRIIDSDNEFATLADVNIFAGDQVIVRDSEIHENRDIADELCDDKMDLQHTEEGFRGTLLTANVSSQLQGY* 1086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0635 1085 ProSiteProfiles DUSP domain profile. 514 606 IPR006615 GO:0004843
Gso6g0635 1085 MobiDBLite consensus disorder prediction 1 25 - -
Gso6g0635 1085 SUPERFAMILY DUSP-like 516 606 IPR035927 -
Gso6g0635 1085 ProSiteProfiles Ubiquitin domain profile. 974 1040 IPR000626 GO:0005515
Gso6g0635 1085 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 107 450 IPR028889 -
Gso6g0635 1085 Gene3D - 972 1043 - -
Gso6g0635 1085 SUPERFAMILY Ubiquitin-like 974 1040 IPR029071 -
Gso6g0635 1085 Pfam Ubiquitin carboxyl-terminal hydrolase 108 447 IPR001394 GO:0004843|GO:0016579
Gso6g0635 1085 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 344 362 IPR018200 GO:0004843|GO:0006511
Gso6g0635 1085 ProSiteProfiles DUSP domain profile. 621 728 IPR006615 GO:0004843
Gso6g0635 1085 Gene3D - 505 607 IPR035927 -
Gso6g0635 1085 CDD Ubl_USP48 973 1074 IPR044743 GO:0004197|GO:0004843|GO:0016579
Gso6g0635 1085 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 2 1053 - -
Gso6g0635 1085 SMART dusp 532 603 IPR006615 GO:0004843
Gso6g0635 1085 PANTHER UBIQUITINYL HYDROLASE 1-RELATED 2 1053 - -
Gso6g0635 1085 CDD Peptidase_C19L 108 447 IPR033841 GO:0004843
Gso6g0635 1085 SUPERFAMILY Cysteine proteinases 106 450 IPR038765 -
Gso6g0635 1085 Gene3D Cysteine proteinases 90 450 - -
Gso6g0635 1085 Gene3D - 745 866 IPR035927 -
Gso6g0635 1085 MobiDBLite consensus disorder prediction 10 24 - -
Gso6g0635 1085 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 108 123 IPR018200 GO:0004843|GO:0006511
Gso6g0635 1085 ProSiteProfiles DUSP domain profile. 749 869 IPR006615 GO:0004843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0635 Gso-Chr6 5885294 5897390 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0635 105 382 Miscellaneous Gene Families AT2G24640 29.766 1.68e-25 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0635 - K11858 gmx:100815770 2189.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0632 4 6149409 6161327 Gso6g0635 6 5885294 5897390 GST
Gso14g1076 14 18746618 18756634 Gso6g0635 6 5885294 5897390 PCT
Gso6g0635 6 5885294 5897390 Gso14g1076 14 18746618 18756634 PCT