Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0571 ATGTCTAAAGTTTTCAGCTTTACCGGAAATGATGATTTCTACCATGGGGGCCCTATTTATCCTAACCCGAAGGAACCATGTCTCTTCTTGTCTCTTGGCCGTCAAGTTGATGTTTACCTTCCTCTTCAGAAGAGGTCTCGCTTCAGTGTTCCATTTGATATCAGCGGAGAATGGTTTGAGCAGAAGCAGAAGCCAAAGACATCTATTGAATCTTTGCCAGATGAATGCCTCTTTGAGATCCTTAGAAGGCTGCCTGCAGGCCAAGATAGGAGTGTCTGTGCTTCTGTATCCAAGCGCTGGCTTATGCTTCTGAGCAGTATTTGCAAGACTGAAATCCACAGCTACGGAAGTACTGGAAATGAAAACCAGGAAATTAGTGACGAAGGATACCTATCCCGAAGCTTGGAGGGAAAGAAGGCAACAGATGTTAGACTTGCTGCCATTGCCGTTGGGACAGCCTCTCGAGGAGGGTTGGGGAAGCTTACAATTCGTGGATGCAATTCAGATCGTGGGGTGACTAATGTAGGTCTCAAGGCAATTGCTCATGGGTGTCCTTCTCTAAAGGTTTGCTCTCTATGGGATGTCGCTACTGTTGGTGATGTAGGCCTGATTGAGATTGCTAGTGGGTGCCATCAGTTAGAGAAGCTTGACCTATGCAAGTGTCCTAATATTTCTGACAAGACTTTAATAGCAGTTGCGAAGAACTGTCCGAATCTGGCTGAGTTATCCATAGAGTCATGTCCCAACATTGGTAATGAAGGTCTACAAGCTATTGGGAAGTGTCCCAATCTGAGGTCAATCTCAATCAAGAATTGCTCCGGGGTTGGTGATCAGGGAGTTGCTGGCCTCTTGTCTTCAGCTTCTTTTGCTCTAACAAAGGTGAAGCTTGAGTCACTGACTGTTTCTGATCTCTCTCTAGCAGTGATTGGGCATTATGGTGTTGCAGTTACCGATCTTGTCCTAAGTTGCCTCCCAAATGTCAGCGAGAAAGGGTTCTGGGTTATGGGTAATGGCCACGGACTGCAGAAACTAACTTCAATCACAATCAATTGCTGCCAAGGAGTGACAGATGTTGGGCTTGAAGCTATTGGAAGGGGTTGTCCAAATGTGCAAAACTTGAAGCTTCGTAAGAGTGCTTTTCTGTCAGACAAGGGATTAGTATCATTTGCCAGGGCTGCTCCATCAGTTGAGAGCCTGCAATTGCAAGAGTGCCACAGAATTACCCAAATTGGGCTCTTTGGTGTCTTTTTTAACTGTGGTGCAAAATTGAAGGTTCTTACTCTGATTAGCTGCTATGGGATCAAAGATCTCAATATGGATTTGCCAGCAATATCTCCTTCTGAATCAATTTGGTCATTAACAATCCATGACTGCCCTGGATTTGGCAATGCTAACCTTGCCTTACTTGGAAAGCTGTGTCCTCGGCTTCAGCATGTTGAATTGAGTGGACTTCAGGGAGTAACAGATGCAGGGTTTCTTCCATTGCTGGAGAGCTCTGAGGCTGGTCTGGTTAAAGTTAATCTAAATGGCTGTGTAAATCTTTCAGACAGAGTAGTTTTGTCCATGGTCAACTCACATGGATGGACTCTCGAGGTGCTAAGCCTTGATGGTTGTAAAAGAGTTGGTGATGCTAGCTTGATGGCAATTGCAGGCAGTTGCCCATTGCTTGCTGATCTCGATGTTTCCAGGTGTGCAATCACTGATACAGGTATCGCAGCCCTTGCACGCGGAAAGCAGATTAACCTTGAGGTACTTTCTTTGGCAGGTTGTGCATTGGTTTCAGACAAGAGCGTGCCTGCCTTGAAAAAAATGGGCTGTTCCCTTGCTGGATTAAATATCAAGCGTTGCAAAGGAATCAGCAGCCGCTCTGTCAACAAGCTTCAGGAACATCTCTGCATGTGTGACATCCTCTACTGA 1917 0.457 MSKVFSFTGNDDFYHGGPIYPNPKEPCLFLSLGRQVDVYLPLQKRSRFSVPFDISGEWFEQKQKPKTSIESLPDECLFEILRRLPAGQDRSVCASVSKRWLMLLSSICKTEIHSYGSTGNENQEISDEGYLSRSLEGKKATDVRLAAIAVGTASRGGLGKLTIRGCNSDRGVTNVGLKAIAHGCPSLKVCSLWDVATVGDVGLIEIASGCHQLEKLDLCKCPNISDKTLIAVAKNCPNLAELSIESCPNIGNEGLQAIGKCPNLRSISIKNCSGVGDQGVAGLLSSASFALTKVKLESLTVSDLSLAVIGHYGVAVTDLVLSCLPNVSEKGFWVMGNGHGLQKLTSITINCCQGVTDVGLEAIGRGCPNVQNLKLRKSAFLSDKGLVSFARAAPSVESLQLQECHRITQIGLFGVFFNCGAKLKVLTLISCYGIKDLNMDLPAISPSESIWSLTIHDCPGFGNANLALLGKLCPRLQHVELSGLQGVTDAGFLPLLESSEAGLVKVNLNGCVNLSDRVVLSMVNSHGWTLEVLSLDGCKRVGDASLMAIAGSCPLLADLDVSRCAITDTGIAALARGKQINLEVLSLAGCALVSDKSVPALKKMGCSLAGLNIKRCKGISSRSVNKLQEHLCMCDILY* 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0571 638 SUPERFAMILY RNI-like 297 634 - -
Gso6g0571 638 SUPERFAMILY RNI-like 160 288 - -
Gso6g0571 638 PANTHER UNCHARACTERIZED 16 629 - -
Gso6g0571 638 SMART fbox_2 72 113 IPR001810 GO:0005515
Gso6g0571 638 SMART LRR_CC_2 500 525 IPR006553 -
Gso6g0571 638 SMART LRR_CC_2 605 630 IPR006553 -
Gso6g0571 638 SMART LRR_CC_2 553 577 IPR006553 -
Gso6g0571 638 SMART LRR_CC_2 184 209 IPR006553 -
Gso6g0571 638 SMART LRR_CC_2 262 286 IPR006553 -
Gso6g0571 638 SMART LRR_CC_2 527 552 IPR006553 -
Gso6g0571 638 SMART LRR_CC_2 473 498 IPR006553 -
Gso6g0571 638 SMART LRR_CC_2 236 261 IPR006553 -
Gso6g0571 638 SMART LRR_CC_2 579 604 IPR006553 -
Gso6g0571 638 SMART LRR_CC_2 393 418 IPR006553 -
Gso6g0571 638 SMART LRR_CC_2 341 366 IPR006553 -
Gso6g0571 638 SMART LRR_CC_2 210 235 IPR006553 -
Gso6g0571 638 SMART LRR_CC_2 367 392 IPR006553 -
Gso6g0571 638 PANTHER EIN3-BINDING F-BOX-LIKE PROTEIN 16 629 - -
Gso6g0571 638 Gene3D Ribonuclease Inhibitor 61 284 IPR032675 -
Gso6g0571 638 Gene3D Ribonuclease Inhibitor 285 444 IPR032675 -
Gso6g0571 638 Gene3D Ribonuclease Inhibitor 445 637 IPR032675 -
Gso6g0571 638 SUPERFAMILY F-box domain 65 106 IPR036047 GO:0005515
Gso6g0571 638 Pfam F-box domain 70 108 IPR001810 GO:0005515
Gso6g0571 638 Pfam Leucine Rich repeat 553 575 IPR001611 GO:0005515
Gso6g0571 638 Pfam Leucine Rich repeat 235 258 IPR001611 GO:0005515
Gso6g0571 638 Pfam Leucine Rich repeat 342 363 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0571 Gso-Chr6 5297751 5301434 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0571 K14515 - gmx:547505 1279.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0574 4 5560066 5563622 Gso6g0571 6 5297751 5301434 GST
Gso14g1007 14 14643287 14646960 Gso6g0571 6 5297751 5301434 PCT
Gso17g1791 17 35075361 35078812 Gso6g0571 6 5297751 5301434 PCT
Gso6g0571 6 5297751 5301434 Gso14g1007 14 14643287 14646960 PCT
Gso6g0571 6 5297751 5301434 Gso17g1791 17 35075361 35078812 PCT