Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0574 ATGTCTAAAGTCTTCAGCTTTACCGGAAATGATGATTTTTATCATGGGGGTCCTATTTATCCTAACCCGAAGGAACCGTGTCTCTTCTTGTCTCTTGGCCGTCAAGTTGATGTTTACCTTCCTCTTCAGAAGAGGTCTCGCTTCAGTGTTCCATTTGATATCAGTGGAGAATGGTTTGAGCAGAAGCCTAAGACATCTATTGAATCTTTGCCAGATGAATGCCTCTTTGAGATCCTTAGAAGGTTGCCTGCAGGCCAAGATAGGAGTGTCTGCGCTTCTGTATCCAAGCGCTGGCTTATGCTTCTGAGCAGTATTTGTAAGAATGAAACTTACAGCAACGAAAGTACTGGAAATGAAAATCAGGAAATTAGTGATGAAGGATACCTATCCCGAAGCTTGGAGGGAAAGAAGGCAACAGATGTAAGACTTGCTGCCATTGCCATTGGGACAGCCTCTCGAGGAGGGTTGGGGAAGCTTACAATTCGTGGATGCAATTCAGATCGTGGGGTGACTAGTGTAGGTCTCAAGGCAATTGCTCATGGGTGCCCTTCTCTAAAGGTTTGCTCTCTATGGGATGTTGCTACTGTTGATGATGAAGGCTTGATTGAGATTGCTAGCGGGTGTCACCGGTTAGAGAAGCTTGACCTATGCAAGTGTCCTAATATTTCTGACAAGACTTTAATTGCAGTTGCAAAGAACTGTCCAAAGCTGGCTGAGTTATCAATAGAGTCGTGTCCTAACATTGGCAATGAAGGTCTACAAGCTATTGGGAAGTGTCCCAATCTAAGGTCTATCTCAATCAAGGATTGCTCTGGAGTTGGTGATCAGGGAGTTGCTGGTGTGTTGTCTTCAGCTTCTTTTGCTCTAACAAAGGTGAAGCTTGAGTCGCTGAATGTTTCTGATCTCTCTCTAGCAGTGATTGGGCATTACGGCATTGCAGTTACCGATCTTGTCCTAAGTTGCCTCCCAAATGTCAGTGAGAAAGGGTTCTGGGTTATGGGTAATGGCCATGGACTGCAGAAACTAACTTCAATCACAATTGATTGCTGCCGAGGAGTAACAGATGTTGGGCTTGAAGCTATTGGAAGGGGTTGTCCAAATGTGCAAAACTTCAAGCTTCGGAAGTGTGCTTTTCTGTCAGACAAGGGATTGGTATCGTTTGCCAGGGCTGCTCCATCAGTTGAGAGCCTACAATTGCAAGAGTGCCACAGAATTACCCAAATTGGGCTCTTTGGTGTCTTTTTTAACTGTGGTGCAAAATTGAAGGTTCTTACTCTGATTAGCTGCTATGGGATCAAAGATCTCAATATGGAATTGCCTGCAATATCTCCTTCTGAATCAATTTGGTCATTAACAATCCGTGACTGCCCTGGATTTGGCGATGCTAACCTTGCTTTACTTGGAAAGCTGTGTCCTCGGATTCAGCATGTTGAATTGAGTGGACTTCAGGGAGTAACAGATGCAGGGTTTCTTCCACTGCTGGAGAGCTCTGAGGCTGGTCTGGTTAAAGTTAATCTAAGTGGTTGTGTAAATCTGACGGACAGAGTAGTTTTGTCCATGGTTAACTCACATGGATGGACTCTCGAGGTGCTAAGCCTTGATGGTTGTAAAAGAGTCAGTGATGCTAGCTTGATGGCTATTGCAGGTAGTTGCCCAGTGCTCGCTGATCTCGATGTTTCCAGGTGTGCAATCACTGATACTGGTATCGCAGCCCTTGCCCGAGGAAAACAGTTCAACCTGGAGGTACTTTCTTTGGCAGGTTGCGCATTGGTTTCAGACAAGAGCGTGCCTGCATTGAAAAAATTGGGCCGTTCCCTTGCTGGATTAAATATCAAGCTTTGCAATGCAATCAGCAGCCGCTCAGTTGACAAGCTTCTGGGACATCTCTGCATGTGTGACATCCTCTACTGA 1911 0.4537 MSKVFSFTGNDDFYHGGPIYPNPKEPCLFLSLGRQVDVYLPLQKRSRFSVPFDISGEWFEQKPKTSIESLPDECLFEILRRLPAGQDRSVCASVSKRWLMLLSSICKNETYSNESTGNENQEISDEGYLSRSLEGKKATDVRLAAIAIGTASRGGLGKLTIRGCNSDRGVTSVGLKAIAHGCPSLKVCSLWDVATVDDEGLIEIASGCHRLEKLDLCKCPNISDKTLIAVAKNCPKLAELSIESCPNIGNEGLQAIGKCPNLRSISIKDCSGVGDQGVAGVLSSASFALTKVKLESLNVSDLSLAVIGHYGIAVTDLVLSCLPNVSEKGFWVMGNGHGLQKLTSITIDCCRGVTDVGLEAIGRGCPNVQNFKLRKCAFLSDKGLVSFARAAPSVESLQLQECHRITQIGLFGVFFNCGAKLKVLTLISCYGIKDLNMELPAISPSESIWSLTIRDCPGFGDANLALLGKLCPRIQHVELSGLQGVTDAGFLPLLESSEAGLVKVNLSGCVNLTDRVVLSMVNSHGWTLEVLSLDGCKRVSDASLMAIAGSCPVLADLDVSRCAITDTGIAALARGKQFNLEVLSLAGCALVSDKSVPALKKLGRSLAGLNIKLCNAISSRSVDKLLGHLCMCDILY* 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0574 636 ProSiteProfiles F-box domain profile. 64 114 IPR001810 GO:0005515
Gso4g0574 636 PANTHER EIN3-BINDING F-BOX-LIKE PROTEIN 16 627 - -
Gso4g0574 636 Pfam F-box domain 68 106 IPR001810 GO:0005515
Gso4g0574 636 PANTHER UNCHARACTERIZED 16 627 - -
Gso4g0574 636 SMART fbox_2 70 111 IPR001810 GO:0005515
Gso4g0574 636 Gene3D Ribonuclease Inhibitor 131 355 IPR032675 -
Gso4g0574 636 Gene3D Ribonuclease Inhibitor 445 635 IPR032675 -
Gso4g0574 636 Gene3D Ribonuclease Inhibitor 362 443 IPR032675 -
Gso4g0574 636 SUPERFAMILY F-box domain 63 104 IPR036047 GO:0005515
Gso4g0574 636 SMART LRR_CC_2 498 523 IPR006553 -
Gso4g0574 636 SMART LRR_CC_2 365 390 IPR006553 -
Gso4g0574 636 SMART LRR_CC_2 234 259 IPR006553 -
Gso4g0574 636 SMART LRR_CC_2 182 207 IPR006553 -
Gso4g0574 636 SMART LRR_CC_2 391 416 IPR006553 -
Gso4g0574 636 SMART LRR_CC_2 471 496 IPR006553 -
Gso4g0574 636 SMART LRR_CC_2 551 575 IPR006553 -
Gso4g0574 636 SMART LRR_CC_2 577 602 IPR006553 -
Gso4g0574 636 SMART LRR_CC_2 339 364 IPR006553 -
Gso4g0574 636 SMART LRR_CC_2 603 628 IPR006553 -
Gso4g0574 636 SMART LRR_CC_2 208 233 IPR006553 -
Gso4g0574 636 SMART LRR_CC_2 525 550 IPR006553 -
Gso4g0574 636 SMART LRR_CC_2 260 284 IPR006553 -
Gso4g0574 636 Gene3D - 60 109 - -
Gso4g0574 636 SUPERFAMILY RNI-like 169 408 - -
Gso4g0574 636 Pfam Leucine Rich repeat 233 256 IPR001611 GO:0005515
Gso4g0574 636 Pfam Leucine Rich repeat 551 573 IPR001611 GO:0005515
Gso4g0574 636 SUPERFAMILY RNI-like 293 632 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0574 Gso-Chr4 5560066 5563622 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0574 K14515 - gmx:100805418 1272.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0574 4 5560066 5563622 Gso6g0571 6 5297751 5301434 GST
Gso14g1007 14 14643287 14646960 Gso4g0574 4 5560066 5563622 PCT
Gso17g1791 17 35075361 35078812 Gso4g0574 4 5560066 5563622 PCT
Gso4g0574 4 5560066 5563622 Gso14g1007 14 14643287 14646960 PCT
Gso4g0574 4 5560066 5563622 Gso17g1791 17 35075361 35078812 PCT