Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1791 ATGTCCAAAGTTCTCGGCTTTTCCGGAGTTGACGATTTTTGCCCGATGGGATCAATATATGCCAACCCCAAGGAAGCAAGTTTCTTCTTGCCTCTTGGCCCTCAAGTTGATGTATACTTTCCTCCTCGGAAGAGATCGCGTGTCAACACTCCATTCGTTTTCGATGGAGAATGGTTTGAGCAAAAGCCGAAAACCTCTGTTGAAGCCTTGCCAGATGAGTGTCTCTTTGAGATCTTTAGGAGGTTGCCTTCTGGGGAAGACAGGAGTGCATGTGCCTGTGTTTCCAAGCGATGGCTTATGCTTCTAAGCAGTATTTGCAAAAATGAAATCTGTGTTAACAAAAATGCCACTGTAGAGACCATTGAAAAGGAGGGTGATGATGTAGAATTTGGAGGTGAGGGATATCTCTCTCGAAGCTTGGAAGGAAAGAAGGCAACAGATGTTAGACTAGCTGCCATAGCTGTTGGGACTTCGTCTCGGGGAGGATTGGGGAAGCTCTCAATCCGTGGAAGCAACATGGTTCGTGGGGTGACTAGTCATGGTCTCAAGGCTGTTGCTCGTGGATGCCCTTCTTTGAAGGCTCTTTCTCTATGGAATGTTGCTACCGTTGGTGATGAGGGCCTAATTGAGATTGCTAATGGATGCCACCAGCTAGAGAAGCTTGACCTTTGCAAGTGCCCTGCAATTACTGATAAGGCTTTGGTTGCAATTGCAAAGAACTGCCAGAATCTGACTGAGTTGTCATTTGAATCTTGCCCTAACATTGGTAATGAAGGTCTACGAGCTATTGGGAAGTTATGCTCCAATCTGAAGTCCATATCCATCAAGGACTGCACTGGTGTTAGTGATCACGGAATTGCTGGATTGCTTTCTTCAACTTCTTTGGTTCTATCAAAGGTGAAGCTCCAGGCATTGACTGTTTCAGATCTCTCTCTAGCTGTTATTGGTCATTATGGCAAGTCAGTTACTGATCTTGTCCTTAATTGCCTCCCAAATGTCAGCGAGAGGGGGTTCTGGGTCATGGGTAATGGTAATGGATTGCAGAAGCTAAAATCACTTACAGTTGCATCTTGCAAAGGAGTAACAGATATTGGGCTTGAAGCTGTAGGAAAGGGTTGTCCAAATCTGAAAATTGCACACCTCCACAAGTGTGCATTTCTGTCAGACAATGGGTTGATGTCATTCGCCAAGGCTGCTTCATCACTTGAAAGCCTACGATTGGAAGAGTGCCACAGAATTACCCAACTTGGGTTTTTTGGTGTCCTTTTTAACTGTGGTGCAAAATTGAAGGCTATCTCTTTGGTGAGCTGCTATGGGATCAAAGATCTGAACTTGGTGTTGCCAACAGTATCTCCATGTGAATCACTTCGGTCGTTGTCTATCAGTAACTGTTCTGGATTTGGCAACGCCTCCCTGTCTGTATTGGGAAAGCTGTGCCCTCAGCTTCAGCATGTTGAATTGAGTGGACTTGAGGGAGTGACAGATGCAGGGCTTCTTCCACTCCTTGAGAGTTCCGAGGCTGGTTTGGTTAAAGTGAACCTTAGTGGTTGCACAAACATTACCGACAAAGTAGTTTCATCCTTGGCCAATCTGCATGGTTGGACTCTTGAGAATCTAAACCTTGATGGTTGCAAAAATATCAGTGATGCTAGCTTGATGGCAATTGCTGAAAACTGTGCATTGCTATGTGATCTTGATGTCTCCAAGTGCACAATCACTGATGCTGGGATTGCAGTCCTGGCACATGCCGAACAGATTAATCTGCAAATCCTTTCTTTGTCAGGTTGCACTTTGGTCTCAGACAGGAGCTTAACCGCTCTGAGAAAATTAGGCCACACCCTTTTGGGACTAAACATCCAACACTGCAATGCAATCAACAACAGCACGGTTGACACACTTGTGGAGTTTCTCTGGAGGTGTGACATCCTCTCCTGA 1935 0.4548 MSKVLGFSGVDDFCPMGSIYANPKEASFFLPLGPQVDVYFPPRKRSRVNTPFVFDGEWFEQKPKTSVEALPDECLFEIFRRLPSGEDRSACACVSKRWLMLLSSICKNEICVNKNATVETIEKEGDDVEFGGEGYLSRSLEGKKATDVRLAAIAVGTSSRGGLGKLSIRGSNMVRGVTSHGLKAVARGCPSLKALSLWNVATVGDEGLIEIANGCHQLEKLDLCKCPAITDKALVAIAKNCQNLTELSFESCPNIGNEGLRAIGKLCSNLKSISIKDCTGVSDHGIAGLLSSTSLVLSKVKLQALTVSDLSLAVIGHYGKSVTDLVLNCLPNVSERGFWVMGNGNGLQKLKSLTVASCKGVTDIGLEAVGKGCPNLKIAHLHKCAFLSDNGLMSFAKAASSLESLRLEECHRITQLGFFGVLFNCGAKLKAISLVSCYGIKDLNLVLPTVSPCESLRSLSISNCSGFGNASLSVLGKLCPQLQHVELSGLEGVTDAGLLPLLESSEAGLVKVNLSGCTNITDKVVSSLANLHGWTLENLNLDGCKNISDASLMAIAENCALLCDLDVSKCTITDAGIAVLAHAEQINLQILSLSGCTLVSDRSLTALRKLGHTLLGLNIQHCNAINNSTVDTLVEFLWRCDILS* 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1791 644 SUPERFAMILY RNI-like 184 295 - -
Gso17g1791 644 Pfam Leucine Rich repeat 565 581 IPR001611 GO:0005515
Gso17g1791 644 Pfam Leucine Rich repeat 240 263 IPR001611 GO:0005515
Gso17g1791 644 Gene3D Ribonuclease Inhibitor 240 444 IPR032675 -
Gso17g1791 644 SUPERFAMILY F-box domain 61 104 IPR036047 GO:0005515
Gso17g1791 644 Pfam F-box domain 70 106 IPR001810 GO:0005515
Gso17g1791 644 Gene3D Ribonuclease Inhibitor 146 239 IPR032675 -
Gso17g1791 644 Gene3D - 64 102 - -
Gso17g1791 644 PANTHER UNCHARACTERIZED 17 635 - -
Gso17g1791 644 SUPERFAMILY RNI-like 307 640 - -
Gso17g1791 644 PANTHER EIN3-BINDING F-BOX PROTEIN 1 17 635 - -
Gso17g1791 644 SMART LRR_CC_2 347 372 IPR006553 -
Gso17g1791 644 SMART LRR_CC_2 453 478 IPR006553 -
Gso17g1791 644 SMART LRR_CC_2 241 266 IPR006553 -
Gso17g1791 644 SMART LRR_CC_2 373 398 IPR006553 -
Gso17g1791 644 SMART LRR_CC_2 559 583 IPR006553 -
Gso17g1791 644 SMART LRR_CC_2 585 610 IPR006553 -
Gso17g1791 644 SMART LRR_CC_2 267 292 IPR006553 -
Gso17g1791 644 SMART LRR_CC_2 215 240 IPR006553 -
Gso17g1791 644 SMART LRR_CC_2 533 558 IPR006553 -
Gso17g1791 644 SMART LRR_CC_2 399 424 IPR006553 -
Gso17g1791 644 SMART LRR_CC_2 506 531 IPR006553 -
Gso17g1791 644 SMART LRR_CC_2 189 214 IPR006553 -
Gso17g1791 644 SMART LRR_CC_2 479 504 IPR006553 -
Gso17g1791 644 Gene3D Ribonuclease Inhibitor 445 644 IPR032675 -
Gso17g1791 644 SMART fbox_2 70 111 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1791 Gso-Chr17 35075361 35078812 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1791 K14515 - gmx:100819226 1277.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1007 14 14643287 14646960 Gso17g1791 17 35075361 35078812 GST
Gso17g1791 17 35075361 35078812 Gso4g0574 4 5560066 5563622 PCT
Gso17g1791 17 35075361 35078812 Gso6g0571 6 5297751 5301434 PCT
Gso4g0574 4 5560066 5563622 Gso17g1791 17 35075361 35078812 PCT
Gso6g0571 6 5297751 5301434 Gso17g1791 17 35075361 35078812 PCT