Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0557 ATGGCTTCCAACAAACTCCTTGCCACCATTTTGGTGCTTTCTCTCCTCTTTTACTCAACATTCACTCATGCCAATTGCCCACCACCCACTCCAACTCCATCTCCATCTCCGAAGCCCACACCACCCACACCACCAACTCCAAAACCAACACCTCCCACTCCAAAGCCCACGCCACCAACTCCAAAACCAACACCACCCACTCCAAAGCCCACACCACCCACACCCACACCCACACCACCCACACCCAAGGCTGGTTGTCCTCCACCTTCTCCTCCGAAGCCCACACCACCCACACCACCAACTCCAAAACCAACACCACCCACACCCACACCCACACCCACACCACCCACACCACCCACACCCAAGGCTGGTTGTCCTCCACCTTCTCCTCCTTCGCCACCCAAAGCTTCATGCCCCAAGGACACATTAAAGCTAGGTGTTTGTGCTGACATCTTAGGACTTGTTAACGTTACTGTTGGAACTCCTCCTTCGAGCGAATGCTGTGCATTGGTTAAGGGTTTGGCAGATTTGGAAGCTGCACTTTGCCTATGCACCGCAATTAAGGCCAATGTGCTTGGAATAAACTTGAACGTACCTGTCACGCTCAGCGTGATCCTTAGTGCTTGTCAAAAAACTGTTCCTCCTGGTTTCCAATGTCCCTCCTAA 666 0.5285 MASNKLLATILVLSLLFYSTFTHANCPPPTPTPSPSPKPTPPTPPTPKPTPPTPKPTPPTPKPTPPTPKPTPPTPTPTPPTPKAGCPPPSPPKPTPPTPPTPKPTPPTPTPTPTPPTPPTPKAGCPPPSPPSPPKASCPKDTLKLGVCADILGLVNVTVGTPPSSECCALVKGLADLEAALCLCTAIKANVLGINLNVPVTLSVILSACQKTVPPGFQCPS* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0557 221 MobiDBLite consensus disorder prediction 26 137 - -
Gso6g0557 221 PANTHER - 1 30 - -
Gso6g0557 221 PANTHER - 111 220 - -
Gso6g0557 221 Pfam Hydrophobic seed protein 138 220 IPR027923 -
Gso6g0557 221 PRINTS Proline rich extensin signature 28 40 - -
Gso6g0557 221 PRINTS Proline rich extensin signature 40 61 - -
Gso6g0557 221 PRINTS Proline rich extensin signature 66 82 - -
Gso6g0557 221 PANTHER LIPID TRANSFER PROTEIN 111 220 - -
Gso6g0557 221 PANTHER LIPID TRANSFER PROTEIN 1 30 - -
Gso6g0557 221 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 141 220 IPR036312 -
Gso6g0557 221 Gene3D - 136 221 IPR036312 -
Gso6g0557 221 MobiDBLite consensus disorder prediction 22 138 - -
Gso6g0557 221 CDD HPS_like 136 219 IPR027923 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0557 Gso-Chr6 5165140 5166214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0557 131 220 Acyl Lipid Metabolism Gene Families AT4G22490 41.304 3.95e-18 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0557 - - gsj:114414965 188.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0561 4 5426453 5427389 Gso6g0557 6 5165140 5166214 GST
Gso14g0994 14 14144048 14144912 Gso6g0557 6 5165140 5166214 PCT
Gso17g1801 17 35325333 35326309 Gso6g0557 6 5165140 5166214 PCT
Gso6g0557 6 5165140 5166214 Gso14g0994 14 14144048 14144912 PCT
Gso6g0557 6 5165140 5166214 Gso17g1801 17 35325333 35326309 PCT