Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1801 ATGGCTTCCAACAAGGTTATTGCCACCATCATGGTGCTTTCTCTCCTTGCCTACTCAACATCATTCACCAATGCATGTGGCACATGCCACCCAAAACCTACCCCTTCTCCTCCTCCTCCATCAGGAAAGTGCCCTAAGGACACATTGAAGCTAGGGGTGTGTGCAGATATTCTAGGTCTTGTTACTGTTGTTGTTGGCTCCCCTGTCTCCAGCAAGTGTTGTGCATTGCTTGAAGGTTTGGCTGATTTGGAGGCTGCACTTTGCCTTTGCACTGCTATTAAGGCCAATGTTCTTGGAATCAACTTGAATGTGCCTATCACACTCAGTGTGCTACTCAGTGCTTGCCAAAAAACTGTTCCTTCTGGTTTCCAATGTGCATAG 381 0.4724 MASNKVIATIMVLSLLAYSTSFTNACGTCHPKPTPSPPPPSGKCPKDTLKLGVCADILGLVTVVVGSPVSSKCCALLEGLADLEAALCLCTAIKANVLGINLNVPITLSVLLSACQKTVPSGFQCA* 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1801 126 PANTHER - 28 126 - -
Gso17g1801 126 PANTHER - 1 26 - -
Gso17g1801 126 CDD HPS_like 47 125 IPR027923 -
Gso17g1801 126 Gene3D - 42 126 IPR036312 -
Gso17g1801 126 PANTHER LIPID TRANSFER PROTEIN 1 26 - -
Gso17g1801 126 PANTHER LIPID TRANSFER PROTEIN 28 126 - -
Gso17g1801 126 SMART aai_6 44 125 IPR016140 -
Gso17g1801 126 Pfam Hydrophobic seed protein 44 126 IPR027923 -
Gso17g1801 126 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 47 125 IPR036312 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1801 Gso-Chr17 35325333 35326309 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1801 34 125 Acyl Lipid Metabolism Gene Families AT4G22490 37.234 1.83e-17 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1801 - - gmx:100306307 214.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0994 14 14144048 14144912 Gso17g1801 17 35325333 35326309 GST
Gso17g1801 17 35325333 35326309 Gso4g0561 4 5426453 5427389 PCT
Gso17g1801 17 35325333 35326309 Gso6g0557 6 5165140 5166214 PCT
Gso4g0561 4 5426453 5427389 Gso17g1801 17 35325333 35326309 PCT
Gso6g0557 6 5165140 5166214 Gso17g1801 17 35325333 35326309 PCT