Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0561 ATGGCTTCCAACAAACTCCTGGCCACCATTTTGGTGCTTTCTCTCCTCTCTTACTCAACATTCACTCATGCCAATTGCCCACCACCCACTCCATCTCCAAAGCCCACACCACCAACTCCAATACCAACACCACCCACACCAAAGCCCACACCACCCACTCCAAAGCCCACACCACCAACTCCTAAGCCCACACCACCCACACCAAATCCCACACCACCTACTCCAAAGCCTAGTTGTCCTCCTCCTTCTCCTCCTTCACCACCATCAAACAAAGCCTCATGCCCCAAGGACACATTAAAGCTAGGTGCTTGTGCTGATCTCTTAGGACTTGTTAACATTATTGTTGGAACTCCTCCTTCGAGCCAGTGTTGTGCATTGATCAAGGGTTTGGCGGATTTGGAAGCTGCACTTTGCCTATGCACCGCAATTAAGAGCAATGTGCTTGGAATCAACTTGAACGTACCTGTGACGCTCAGCGTGATCCTTAGTGCTTGTCAAAAGACTGTCCCTCCTGGTTTCCAATGTCCCTCCTGA 534 0.5037 MASNKLLATILVLSLLSYSTFTHANCPPPTPSPKPTPPTPIPTPPTPKPTPPTPKPTPPTPKPTPPTPNPTPPTPKPSCPPPSPPSPPSNKASCPKDTLKLGACADLLGLVNIIVGTPPSSQCCALIKGLADLEAALCLCTAIKSNVLGINLNVPVTLSVILSACQKTVPPGFQCPS* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0561 177 Pfam Hydrophobic seed protein 94 176 IPR027923 -
Gso4g0561 177 MobiDBLite consensus disorder prediction 23 94 - -
Gso4g0561 177 PRINTS Proline rich extensin signature 26 38 - -
Gso4g0561 177 PRINTS Proline rich extensin signature 40 61 - -
Gso4g0561 177 PRINTS Proline rich extensin signature 66 82 - -
Gso4g0561 177 SMART aai_6 94 175 IPR016140 -
Gso4g0561 177 MobiDBLite consensus disorder prediction 26 91 - -
Gso4g0561 177 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 97 176 IPR036312 -
Gso4g0561 177 CDD HPS_like 92 175 IPR027923 -
Gso4g0561 177 Gene3D - 92 177 IPR036312 -
Gso4g0561 177 PANTHER - 63 176 - -
Gso4g0561 177 PANTHER - 1 30 - -
Gso4g0561 177 PANTHER LIPID TRANSFER PROTEIN 63 176 - -
Gso4g0561 177 PANTHER LIPID TRANSFER PROTEIN 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0561 Gso-Chr4 5426453 5427389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0561 83 176 Acyl Lipid Metabolism Gene Families AT4G22490 40.625 1.71e-19 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0561 - - gmx:100526941 189.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0561 4 5426453 5427389 Gso6g0557 6 5165140 5166214 GST
Gso14g0994 14 14144048 14144912 Gso4g0561 4 5426453 5427389 PCT
Gso17g1801 17 35325333 35326309 Gso4g0561 4 5426453 5427389 PCT
Gso4g0561 4 5426453 5427389 Gso14g0994 14 14144048 14144912 PCT
Gso4g0561 4 5426453 5427389 Gso17g1801 17 35325333 35326309 PCT