Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0549 ATGTCTTCCTTTTCCACTCTCCGGAGATTCTCACTTTTCACCCAACAACGCTTCCGTAACCTTCACTCCTCTTCCATTTCCCAATCCTCCTCCTCCTCCTCTTCCAACCCACATAGTAATCCCAAGTGGGGTTCAGCCATTGTCGTAGCCTCTGCTCTTGCCCTTTTCTATTGCTTCAACACACCCAATTCACACTTCGAATTCTCAAACAATGCTCCTCGCAGTTCTTCACCGCCATTGTTTGAAAAATCATCCCTTCCTGAAAGCACACATGATCACTTGCTTTTTGGAGATGCCTACAGAAGCAAAGTTTTCTTCAACTATGAGAAGCGCCTACGGTTGCATAGTCCACCCGAAAAGGTTTTTGAATACTTTGCATCTTGTCGTACTCTAGAAGGAGAACTACTGATGAAGCCAGTGGACCTAATGCGAGCAGTTGTTCCTGTTTTCCCTCCTTCAGAATCCAACCTTGTAAGAGAGGGATACTTGAAAGGTGAAAGAAATCCTGGCCATTTATTCTGTCCCCCTTCGGAGTTTTTTATGCTTTTTGATGTAGACAACGATGGGCTTATATCTTTCAAAGAGTATATCTTTTTTGTAACTCTACTAAGCATCCAAGAATCAAGCTTTTCTGCAGCATTTAAAATGTTTGACAAGGATAATGACGGGGAGATAGATAAGGAAGAATTCAAGAAAGTGATGCAATCAATGCGATCTCATACCAGACAAGGTGTTCAACACGGGGATGGACGACGAACTGGCCTAAAGGCCAATGCTTCTGTAGAAAATGGAGGGCTGGTGGAATACTTATTTGGTAAAGATGGAAAGGGACGCCTCAAACATGATAAATTCGTGCAGTTTATAAGAGACTTGCATGATGAAATTGTAGGGCTGGAGTTTGCTCATTATGATTACAAATCTCGAAAAACTATATCGGCCAAGGACTTTGCACACTCCATTGTTGCTTCTGCTGACTTGAGTCATCTGGGCAGGTTGCTTGAACGGGTTGATGAATTGAGCAATGATCCACGGTTTAAGGATGTATGCATAACATTTGAGGAGTTCAAAAATTTTGCAGAGCTGCGGAAAAAATTATTACCATTTTCATTGGCCATTTTCAGTTTTGCAGAAGTGCAAGGCCTGTTAACAAGAGATGATTTTCAGCGAGCTGCATCACATGTTTGTGGCGTATCTCTCTCAGACAACGTGGTTGAGATTGTTTTCCATTTGTTTGACGCAAATGAGGATGGAAATCTGAGTACGGAGGAGTTTGTTAGTGTGCTACAACATCGAGAAAGAGACATTGCTCAACCTGTGGAGACAGGAATCATGGGTTTCTTGTCATGCTGCTGGAAATGTACGGACACCTCTCCATCTTCTCGGTTGTTTTCCTGA 1395 0.4272 MSSFSTLRRFSLFTQQRFRNLHSSSISQSSSSSSSNPHSNPKWGSAIVVASALALFYCFNTPNSHFEFSNNAPRSSSPPLFEKSSLPESTHDHLLFGDAYRSKVFFNYEKRLRLHSPPEKVFEYFASCRTLEGELLMKPVDLMRAVVPVFPPSESNLVREGYLKGERNPGHLFCPPSEFFMLFDVDNDGLISFKEYIFFVTLLSIQESSFSAAFKMFDKDNDGEIDKEEFKKVMQSMRSHTRQGVQHGDGRRTGLKANASVENGGLVEYLFGKDGKGRLKHDKFVQFIRDLHDEIVGLEFAHYDYKSRKTISAKDFAHSIVASADLSHLGRLLERVDELSNDPRFKDVCITFEEFKNFAELRKKLLPFSLAIFSFAEVQGLLTRDDFQRAASHVCGVSLSDNVVEIVFHLFDANEDGNLSTEEFVSVLQHRERDIAQPVETGIMGFLSCCWKCTDTSPSSRLFS* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0549 464 ProSitePatterns EF-hand calcium-binding domain. 218 230 IPR018247 -
Gso6g0549 464 SMART efh_1 175 203 IPR002048 GO:0005509
Gso6g0549 464 SMART efh_1 403 431 IPR002048 GO:0005509
Gso6g0549 464 SMART efh_1 209 237 IPR002048 GO:0005509
Gso6g0549 464 ProSiteProfiles EF-hand calcium-binding domain profile. 205 240 IPR002048 GO:0005509
Gso6g0549 464 CDD EFh_MICU 210 431 - -
Gso6g0549 464 SUPERFAMILY EF-hand 178 430 IPR011992 -
Gso6g0549 464 Gene3D - 118 287 - -
Gso6g0549 464 PANTHER CALCIUM-BINDING EF HAND PROTEIN 1 464 - -
Gso6g0549 464 CDD EFh 178 235 IPR002048 GO:0005509
Gso6g0549 464 PANTHER EF HAND DOMAIN FAMILY A1,A2-RELATED 1 464 IPR039800 GO:0005509|GO:0006851
Gso6g0549 464 Pfam EF hand 211 237 IPR002048 GO:0005509
Gso6g0549 464 ProSiteProfiles EF-hand calcium-binding domain profile. 399 434 IPR002048 GO:0005509
Gso6g0549 464 ProSitePatterns EF-hand calcium-binding domain. 412 424 IPR018247 -
Gso6g0549 464 Gene3D - 300 441 - -
Gso6g0549 464 SUPERFAMILY EF-hand 270 434 IPR011992 -
Gso6g0549 464 Pfam EF-hand domain pair 380 431 IPR002048 GO:0005509
Gso6g0549 464 Pfam EF-hand domain pair 180 201 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0549 Gso-Chr6 5097580 5101895 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0549 42 396 EF-hand Containing Proteins AT4G32060 61.905 6.10e-156 448
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0549 K22827 - gmx:100786375 915.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0553 4 5351056 5356202 Gso6g0549 6 5097580 5101895 GST
Gso17g1809 17 36026974 36032898 Gso6g0549 6 5097580 5101895 PCT
Gso6g0549 6 5097580 5101895 Gso17g1809 17 36026974 36032898 PCT