Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0553 ATGCTCCTACACAACCAAGATGCCTACAGAAGCAAAGTTTTCTTCAACTATGAGAAGCGCCTACAGTTGCATAGTCCACCCGAAAAGGTTTTTGAATACTTTGCATCTTGTCGTACTCCAGAAGGAGAACTACTAATGAAGCCTGTGGACCTAATGCGAGCAGTTGTTCCTGTTTTCCCTCCATCAGAATCCAAACTTGTAAGAGAGGGATACTTGAATGGTGAAAGAAGTCCTGGCCATTTATTCTGTCTCCCTTCAGAATTTTTTATGCTTTTTGATGTAGACAACGACGGACTTATATCTTTCAAAGAGCATATCTTTTTTGTAACTCTGCTTAGCATCCAAGAATCAAGTTTTTCTGCGGCATTTAGGATGTTTGACAAGGATAATGACGGGGAGATAGATAAGGAAGAATTCAAGAAAGTTATGCAATCAATGCGATCTCATACCAGACAAGGTGTTCAACACAGGGATGGACGACGAACTGGCCTAAGGGCCAATGCTTCTGTAGAAAATGGAGGGCTGATGGAATACTTATTTGGTAAAGATGGAAACGGACGCCTCACACACGATAAATTTGTGCGGTTTATAAGAGACTTGCATGATGAAATTGTGAGGCTGGAGTTTGCTCATTATGATTACAAATCTCGAAAAACTATACCGGCCAAGGACTTTGCACACTCCATTGTTGCTTCTGCCGACTTGAGTCATCTGGGCAGGTTGCTTGAACGGGTTGATGAATTGAGCAATGATCCACGGTTTAGGGATGTACGCATAACATTTGACGAGTTCAAAAATTTTGCAGAGCTGAGGAAAAAATTATCACCATTTTCATCAGGCATTTTCAGTTTTGCAGAAGTACAAGGCCTGTTAACAAGAGATGATTTTCAGCGAGCTGCATCACATGTTTGTGGCTTATCTCTCTCAGACAATGTGGTTGAGATTGTTTTCCATTTGTTTGATGCAAATGAGGATGGAAATCTGAGTACGGAGGAGTTTGTTAGTGTGCTACAACATAGAGAAAGAGACATTGCTCAACCTGTGGAAACAGGAATCATGGGTTTCTTGTCATGCTGCTGGAAATTTGCGCACTGTCATCATACCTCAGCTGGGGTTCAATTTAATGATATTTGTTTTCGGAAAATTCCAGTGACCACTGATTTTCATCGATCTTAA 1176 0.4107 MLLHNQDAYRSKVFFNYEKRLQLHSPPEKVFEYFASCRTPEGELLMKPVDLMRAVVPVFPPSESKLVREGYLNGERSPGHLFCLPSEFFMLFDVDNDGLISFKEHIFFVTLLSIQESSFSAAFRMFDKDNDGEIDKEEFKKVMQSMRSHTRQGVQHRDGRRTGLRANASVENGGLMEYLFGKDGNGRLTHDKFVRFIRDLHDEIVRLEFAHYDYKSRKTIPAKDFAHSIVASADLSHLGRLLERVDELSNDPRFRDVRITFDEFKNFAELRKKLSPFSSGIFSFAEVQGLLTRDDFQRAASHVCGLSLSDNVVEIVFHLFDANEDGNLSTEEFVSVLQHRERDIAQPVETGIMGFLSCCWKFAHCHHTSAGVQFNDICFRKIPVTTDFHRS* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0553 391 PANTHER EF HAND DOMAIN FAMILY A1,A2-RELATED 6 371 IPR039800 GO:0005509|GO:0006851
Gso4g0553 391 ProSiteProfiles EF-hand calcium-binding domain profile. 114 149 IPR002048 GO:0005509
Gso4g0553 391 PANTHER CALCIUM-BINDING EF HAND PROTEIN 6 371 - -
Gso4g0553 391 CDD EFh_MICU 119 340 - -
Gso4g0553 391 ProSitePatterns EF-hand calcium-binding domain. 127 139 IPR018247 -
Gso4g0553 391 CDD EFh 87 144 IPR002048 GO:0005509
Gso4g0553 391 Gene3D - 27 168 - -
Gso4g0553 391 Gene3D - 287 349 - -
Gso4g0553 391 Pfam EF-hand domain pair 289 340 IPR002048 GO:0005509
Gso4g0553 391 SUPERFAMILY EF-hand 87 338 IPR011992 -
Gso4g0553 391 Pfam EF hand 120 146 IPR002048 GO:0005509
Gso4g0553 391 Gene3D - 169 286 - -
Gso4g0553 391 ProSitePatterns EF-hand calcium-binding domain. 321 333 IPR018247 -
Gso4g0553 391 ProSiteProfiles EF-hand calcium-binding domain profile. 308 343 IPR002048 GO:0005509
Gso4g0553 391 SMART efh_1 118 146 IPR002048 GO:0005509
Gso4g0553 391 SMART efh_1 312 340 IPR002048 GO:0005509
Gso4g0553 391 SMART efh_1 84 112 IPR002048 GO:0005509
Gso4g0553 391 Pfam EF hand 88 104 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0553 Gso-Chr4 5351056 5356202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0553 7 305 EF-hand Containing Proteins AT4G32060 70.234 2.73e-151 433
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0553 K22827 - gmx:100776910 703.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0553 4 5351056 5356202 Gso6g0549 6 5097580 5101895 GST
Gso17g1809 17 36026974 36032898 Gso4g0553 4 5351056 5356202 PCT
Gso4g0553 4 5351056 5356202 Gso17g1809 17 36026974 36032898 PCT