Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1809 ATGCTTTCGTTTTCCACTCTCAGAAGATCCTCACCCTTCCTCGCCCGACGCTTCTCAACCCAACGGTCCCAGATCCGCCACGCGTCAACCTCCTCCTCCTCCTCCTCCTCACTCCACAACACCGCGAACCCGGTTCGAACCTGGTTCGGTCGAAACGCACTCTCGACCGTCCTCGCCGGCGCGAGCGTATCAGGGCTTCTTCTCTACGGCTACTCTTCTTCGCACAATTCCGAGTTCGACTCGTCTCTGCTGAAGAGCTCAATTTCTTCTCTCGTTGACCGGTCAACGCCGATTTCCGAGGACCAAGAACGGCGTCGTTCGTTCCTTTCGAAAATTTCGCTCCCTGAATGTTCCGGTGCCTTGCTATTTGGAGATTCGTTCAGGAGAAAGGTTTTCTTCAACTATGAGAAGCGCATACGGTTGCGAAGCCCTCCGGAAAAGGTTTTTGAGTACTTTGCATCTGATCGTAGTTCAGAAGGAGAAGTTTTGATGAAACCAGCAGACCTAATGCGAGCAGTGGTTCCTGTTTTCCCTCCTTCTGAATCCCACCTTGTTAGAGATGGATACTTGGAAGGTGAAAGGAGGCCGGGCCATTTATGCTGCCCTTCTTCAGAATTTTTTATGCTTTTTGATGTAAACAATGATGGGCTGATATCTTTTAAAGAGTATATCTTTTTTGTAACACTACTCAGCATCCCAGAATCAAGCTTTTCAGTGACATTTAAAATGTTTGATGTCAACAATAATGGGGAGATAAATAAGGAAGAATTCAAGAAAGTGATGGCATTGATGCGATCTCGTCATCGACAGGGTGTTCACCACAGGGATGGACTGCGAACTGGCCTAAAGGCGAGTGATTCTGTGGAAGATGGAGGGCTGGTGGAATACTTTTTTGATAAAGATGGAAATGGATGCCTCCAACATGATAAATTTGTAAATTTTTTGAGAGGCTTGCATGATGAGATTCTGAGGCTGGAGTTTGCTCATTATGACTACCAATCTTGCCAAACCATATCAGCCAAGGACTTTGCGCTCTCCATGGTTGCTTCTGCCGACATGAGTCATCTAGGCAGGTTGCTTGAAAGGGTTGATGGACTGAATGATGATCCACGCCTTAAGGATGCACGAATCACATTTGAGGACTTCAAAAACTTTGCAGAGCTACGGAAAAAGTTACTGCCATTTTCATTGGCCCTTTTCAGTTTTGGAGAAGTAAATGGCCTGTTGACAAGAGATGATTTTCAGAGAGCAGCATCACATGTATGTGGCATATCTCTCTCGGACACTGTGGTTGAAATTGTTTTCCATTTGTTTGATGCAAATCGGGATGGAAACCTAAGTTTTGACGAGTTTGTCAGAGTGCTACACAAGCGCGAAAGGGACATTGCACAACCCGTGGAGACAGGAATACGGGGTTGGTTGTCTTGCGGTTGGAACTGTACGCATAACTTCTCATCTTCATGA 1464 0.4631 MLSFSTLRRSSPFLARRFSTQRSQIRHASTSSSSSSSLHNTANPVRTWFGRNALSTVLAGASVSGLLLYGYSSSHNSEFDSSLLKSSISSLVDRSTPISEDQERRRSFLSKISLPECSGALLFGDSFRRKVFFNYEKRIRLRSPPEKVFEYFASDRSSEGEVLMKPADLMRAVVPVFPPSESHLVRDGYLEGERRPGHLCCPSSEFFMLFDVNNDGLISFKEYIFFVTLLSIPESSFSVTFKMFDVNNNGEINKEEFKKVMALMRSRHRQGVHHRDGLRTGLKASDSVEDGGLVEYFFDKDGNGCLQHDKFVNFLRGLHDEILRLEFAHYDYQSCQTISAKDFALSMVASADMSHLGRLLERVDGLNDDPRLKDARITFEDFKNFAELRKKLLPFSLALFSFGEVNGLLTRDDFQRAASHVCGISLSDTVVEIVFHLFDANRDGNLSFDEFVRVLHKRERDIAQPVETGIRGWLSCGWNCTHNFSSS* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1809 487 CDD EFh 205 262 IPR002048 GO:0005509
Gso17g1809 487 ProSitePatterns EF-hand calcium-binding domain. 439 451 IPR018247 -
Gso17g1809 487 SUPERFAMILY EF-hand 205 456 IPR011992 -
Gso17g1809 487 Gene3D - 404 467 - -
Gso17g1809 487 PANTHER CALCIUM UPTAKE PROTEIN, MITOCHONDRIAL 1 486 - -
Gso17g1809 487 Pfam EF hand 206 223 IPR002048 GO:0005509
Gso17g1809 487 PANTHER EF HAND DOMAIN FAMILY A1,A2-RELATED 1 486 IPR039800 GO:0005509|GO:0006851
Gso17g1809 487 ProSiteProfiles EF-hand calcium-binding domain profile. 232 267 IPR002048 GO:0005509
Gso17g1809 487 CDD EFh_MICU 237 458 - -
Gso17g1809 487 Pfam EF hand 240 263 IPR002048 GO:0005509
Gso17g1809 487 Gene3D - 272 402 - -
Gso17g1809 487 Pfam EF-hand domain pair 407 456 IPR002048 GO:0005509
Gso17g1809 487 SMART efh_1 430 458 IPR002048 GO:0005509
Gso17g1809 487 SMART efh_1 205 230 IPR002048 GO:0005509
Gso17g1809 487 SMART efh_1 236 264 IPR002048 GO:0005509
Gso17g1809 487 SUPERFAMILY EF-hand 296 388 IPR011992 -
Gso17g1809 487 ProSitePatterns EF-hand calcium-binding domain. 245 257 IPR018247 -
Gso17g1809 487 Gene3D - 120 271 - -
Gso17g1809 487 ProSiteProfiles EF-hand calcium-binding domain profile. 426 461 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1809 Gso-Chr17 36026974 36032898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1809 42 423 EF-hand Containing Proteins AT4G32060 63.566 5.41e-169 482
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1809 K22827 - gmx:100806575 934.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g1809 17 36026974 36032898 Gso4g0553 4 5351056 5356202 PCT
Gso17g1809 17 36026974 36032898 Gso6g0549 6 5097580 5101895 PCT
Gso4g0553 4 5351056 5356202 Gso17g1809 17 36026974 36032898 PCT
Gso6g0549 6 5097580 5101895 Gso17g1809 17 36026974 36032898 PCT