Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1496 ATGGGTGGTGGCGGGAGAGGAGGCAGATCACGCACTCAGAGAAAACACTTCCGCCAGAGCAGAGAGAACGTGTGGAAGCGTTCCAAATCGGATCCCGATCCTTCTTCAACCGAAAACAATCCTGCGTGGACTCCCTTCGCCACTGAGAACGCCGCTTTTGATTTCTACTACAAAGAGCAGGGAATAGTGGACCTGCAATACTGGGACCAATTCGTCGCACTTCTCAGAACTCCATTGCCCGCAACCTTCAGAATCAACTCTAGTAGCCAGTTCTCCGACGACCTTCGTTCTCAATTGGAGAATGACTTCGTGCATTCTCTTCGCGATGAGGTTGTTGAAGGAGGTGAAACGGAGGCTATTCGGCCGTTGCTGTGGTACCCTGGGAACTTCGCTTGGCATTCAAATTTTTCTCGGATGCAGCTCAGGAAGAACCAAACGCTTGAGAGGTTCCATGAATTCTTAAAACTAGAAAATGAGATTGGAAATATCACAAGACAGGAAGCTGTCAGTATGGTTCCTCCCCTCTTCTTGGATGTGCATTCAGATCATTTTGTGCTTGATATGTGTGCTGCACCAGGTTCAAAAACGTTCCAATTGCTTGAGATTATACACCAATCATCTAAAGCAGGATCATTACCTGATGGAATGGTTATAGCAAATGATCTTGATGTCCAAAGATGTAATCTTCTGATCCACCAAACCAAAAGAATGTGCACAGCCAACCTAATTGTTACAAATCACGAAGCTCAGCACTTCCCAGGATGCCGTTTAAACAGGAATTATGAAAGGATGGAGTTAGATCACAATATTGGCCAACTGTTATTTGATCGTGTTCTGTGTGATGTCCCATGCAGTGGAGATGGTACCCTTCGTAAGGCTCCTGATCTCTGGAGGAAATGGAACACAGGGATGGGACATGGCCTTCACAGCCTACAAGTTTTAATTGCTATGCGAGGTTTATCTCTACTTAAAATTGGTGGAAGAATGGTGTATTCAACATGCTCAATGAATCCTATTGAGAATGAAGCTGTGGTTGCTGAGGTTTTGCGGAGGTGTGGAGGGTCTGTCAAACTTGTTGATGTTTCTAGTGAGCTTTCACAACTAATTCGTCAGCCAGGTCTCAAGAGATGGAAGATATATGACAAGGGCACTTGGTTGGTCTCTTATAAAGATGTTCCTAAGTATCGTAGAAGTGTAATTCTTTCCAGTATGTTTCCTTCTGGCAGAGGCCATCATGATCTTGTTGATAGTAGTTGTAGTGTTGACCCAGAGGGCATTACTAATGGTATTAACGGAAATGCTGGAGATGGTGTTCAAGCAGTAGAGAATCCTGTGATGTCCGAGTCTGCCGCGGAAGTTTGTGATTTCCCTCTAGAGCATTGCATGAGGATACTGCCTCATGATCAGAACACTGGAGCCTTCTTCATTGCTGTACTGCAAAAAGTTTCTCCTCTGCCAGCAATTACAGAACAAACCAAAAAAAAGATTGACGAGCAATATGTAGAACCAGCAAACCAGAGTCTTAATGATGCACAAGTACCACAGATTACTTCACCAGAAAGTACACATGAAGAAGTCTTGAATGCAGTGTCAGAGGAAAATGTAGATGACAATGAACCCATTACCGAAGATTTGGAAGTTGGTCCTGTTACATGTGAAGAACAGAATTCCAAGGAAACTCGAGAGCCCGATAATGTACAAAACACAACGAAGAGGGTTCCAGGTAAAAGAAAGCTACAAATTCAAGGCAAATGGAGGGGTGTTGACCCTGTTGTTTTTTTCAAAGATGAAACAATTATTAATAGTATAAAGGATTTCTATGGAATTGATGAGCGTTTTCCTTTCAACGGTCACCTTGTTACAAGAAACAGTGATACAAATCATGTGAAAAGAATTTATTATATCTCCAAGTCAGTCAAGGATGTTCTTGAGTTGAACTTCAAAGTTGGGCAGCAACTTAAAATAACATCAATTGGCATGAAGATGTTTGAAAGACAAACAGCGCGAGAAGGTAGCTCTGCACCATGTGCTTTCCGGATATCATCTGAAGGATTGCCCCTTATTCTTCCATACATAACCAAACAGATTCTGCATGCATCTCCCTCAGACTTCAAGCATCTTCTGCAGAACAAAGAAGTAAAGTTTGAAGATTTTACTGATGCCGAGTTTGGTGAAAAGGCAGCAAACCTATTGCCAGGCTGTTGTGTGGTAATTATGTGTATAGGGAAAACAGTTGCTGCAGAGTCTCTCAAAGTGGATGAGTCAACGATAGCCATTGGATGCTGGAAGGGTAGGGCGAGATTGTCAGTGATGGTTACTGCAATGGACTGCCAAGAACTACTGGAAAGGCTTTTAATACGTTTTGACACTGAAAAGGGCTCCTCTGGGCATTTGGACAATTCCTCTAATGATGTGGAAGAAGTTCAGCCTGTGCAAGAGTTGAACAGGGAAAATGATGACGATGTGTGA 2469 0.4313 MGGGGRGGRSRTQRKHFRQSRENVWKRSKSDPDPSSTENNPAWTPFATENAAFDFYYKEQGIVDLQYWDQFVALLRTPLPATFRINSSSQFSDDLRSQLENDFVHSLRDEVVEGGETEAIRPLLWYPGNFAWHSNFSRMQLRKNQTLERFHEFLKLENEIGNITRQEAVSMVPPLFLDVHSDHFVLDMCAAPGSKTFQLLEIIHQSSKAGSLPDGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRLNRNYERMELDHNIGQLLFDRVLCDVPCSGDGTLRKAPDLWRKWNTGMGHGLHSLQVLIAMRGLSLLKIGGRMVYSTCSMNPIENEAVVAEVLRRCGGSVKLVDVSSELSQLIRQPGLKRWKIYDKGTWLVSYKDVPKYRRSVILSSMFPSGRGHHDLVDSSCSVDPEGITNGINGNAGDGVQAVENPVMSESAAEVCDFPLEHCMRILPHDQNTGAFFIAVLQKVSPLPAITEQTKKKIDEQYVEPANQSLNDAQVPQITSPESTHEEVLNAVSEENVDDNEPITEDLEVGPVTCEEQNSKETREPDNVQNTTKRVPGKRKLQIQGKWRGVDPVVFFKDETIINSIKDFYGIDERFPFNGHLVTRNSDTNHVKRIYYISKSVKDVLELNFKVGQQLKITSIGMKMFERQTAREGSSAPCAFRISSEGLPLILPYITKQILHASPSDFKHLLQNKEVKFEDFTDAEFGEKAANLLPGCCVVIMCIGKTVAAESLKVDESTIAIGCWKGRARLSVMVTAMDCQELLERLLIRFDTEKGSSGHLDNSSNDVEEVQPVQELNRENDDDV* 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1496 822 MobiDBLite consensus disorder prediction 793 822 - -
Gso5g1496 822 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 71 482 IPR001678 GO:0008168
Gso5g1496 822 MobiDBLite consensus disorder prediction 1 43 - -
Gso5g1496 822 Pfam 16S rRNA methyltransferase RsmB/F 176 360 IPR001678 GO:0008168
Gso5g1496 822 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 56 482 IPR029063 -
Gso5g1496 822 Gene3D Vaccinia Virus protein VP39 50 481 IPR029063 -
Gso5g1496 822 MobiDBLite consensus disorder prediction 552 575 - -
Gso5g1496 822 PRINTS RNA (C5-cytosine) methyltransferase signature 186 196 IPR023267 GO:0001510
Gso5g1496 822 PRINTS RNA (C5-cytosine) methyltransferase signature 276 288 IPR023267 GO:0001510
Gso5g1496 822 PRINTS RNA (C5-cytosine) methyltransferase signature 326 342 IPR023267 GO:0001510
Gso5g1496 822 PRINTS RNA (C5-cytosine) methyltransferase signature 464 481 IPR023267 GO:0001510
Gso5g1496 822 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 132 153 IPR023270 GO:0016428
Gso5g1496 822 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 360 379 IPR023270 GO:0016428
Gso5g1496 822 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 653 665 IPR023270 GO:0016428
Gso5g1496 822 PANTHER NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 5 796 IPR023267 GO:0001510
Gso5g1496 822 MobiDBLite consensus disorder prediction 795 809 - -
Gso5g1496 822 ProSitePatterns NOL1/NOP2/sun family signature. 275 286 IPR018314 GO:0003723|GO:0008168
Gso5g1496 822 PANTHER TRNA (CYTOSINE(34)-C(5))-METHYLTRANSFERASE-RELATED 5 796 - -
Gso5g1496 822 MobiDBLite consensus disorder prediction 17 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1496 Gso-Chr5 38421364 38429020 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1496 K15334 - gmx:100808859 1548.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1496 5 38421364 38429020 Gso8g1126 8 10345358 10352285 GST
Gso5g1496 5 38421364 38429020 Gso18g0137 18 1158508 1162386 PCT
Gso5g1496 5 38421364 38429020 Gso13g1482 13 30318233 30326950 PCT