Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1482 ATGGGGAGAGGAAAAAGAGGGAAGAGTCGCACTCAAAGAAAGCATTTCCAGCAGAACAGAGAGAATGTTTGGACATCTTCCAAACGCTCTAAATCAGATCCTTCCTCCGAAAATCCTATTCCTATCTGCAATCCCTACGCCACTCAAAACCTCGCTTTCGATCACTATTACAAGGAGCAGGGAATCGTTTCCTCAGAAGAATGGGATGCATTCGTGCAAGTTCTCAGAACTCCTTTGCCCGCAGCATTCAGAATCAATTCCACTAGCCGATTTTCTGCAGATATTCGGTCCCAACTGGAGAATGATTTTGTGCATTCTCTTCAGGCCGAGGTTGCGGAAGGGGAAGATACGGAGGCTATTATACCTTTGCCATGGTATCCCGAGAATCTTGCTTGGCATTCGAATTTCTCCCGTAAGCAGCTCAGGAAGAATCAAACACTTGGGAGGTTTCATGAATTCTTAAAGCTGGAAAATGAAATTGGAAATATTACAAGACAGGAAGTTGTCAGCATGGCACCTCCTCTGTTCTTGGATGTACATTCAAATCATTTTGTACTTGATATGTGTGCAGCACCAGGTTCAAAAACATTCCAATTGCTCGAGATTTTACACAAATTAACTAAAGCTGGATCTCTTCCTGATGGAATGGTTATAGCAAATGATCTAGATATCCAAAGATGCAATCTTCTCATTCACCAAACAAAACGGATGTGCACAGCCAACCTAATCGTCACCAATCACGAAGCTCAACACTTCCCAGGATGTCTTTTAAACAGGAACTATGATAAAATGGAGCCAGATCAGCAAGATCAGCTATTATTTGATCGTGTTCTGTGTGATGTCCCATGCAGCGGAGATGGCACCCTTCGAAAGGCACCTGATCTCTGGAGGAAATGGAACGCAGGGACAGGGAATGGGCTTCATAACCTACAAGTTCTAATTGCTATGCGAGGTGTATCTTTACTTAAAGTTGGTGGAAAAATGATCTATTCAACCTGCTCAATGAATCCTATTGAGAATGAAGCTGTTGTTGCAGAGGTTTTGCGGAGGGGTGGAGGGTCCATTGAACTTGTAGATGTCTCTAGTGAGCTTCCCCAACTTATTCGCCGACCAGGTCTTAAGAGATGGAAGGTATGTGACAAGGGCAAGTGGTTTTTCTGTTGCAAAGATGTTCCCAAGCTTCGTAGAAATGTAGTTTTTCCCAGCATGTTTCCAAATGGTGGAAACTATAAGGATGATAGTGATTGTAATATCAGCATTGGAGATGATATTATTATAGATGATGTTTATGGAAATTCTGAAGATGATGTTCAAGCAGTGGAGAATCCTGTGATGCATGAATTTACTGAGGAAGTTTCTGATTTCCCACTAGAGCGGTGCATGAGGTTGGTGCCTCATGATCAGAATACCGGAGCCTTCTTTATTGCTGTATTGCAGAAAGTTTCTCCTCTGCCAGCAACTCAGGTAAAACCTAGAAAAGAAGTTGATAAACATGATGACACAGCAAACCAGGGCAATGAGGATGCACAAGAATTGCAGGTTAATCCATTGGAAAGTACACCTGAAGAAATTTCAGAGGCTAATATAAATGACAATAGACCCAAGACAGATTTGAAAGTTAGTTCTGTTACATGTGAAGAAGTGAATTTGAAGGAAGCCCAAGATCCCTGCAATGTGGAAAACATGACAAAGAATACTCCAGGCAAAAGAAAACTACAGATTCAAGGCAAATGGAGAGGCATTGACCCTGTAGTCTTCTTCAAAGATGAAGTAGTTATTAACAGCATAAAGGTATTTTATGGTATTGATGAGCAGTTTCCATTCAATGGTCACCTTGTAACAAGAAACAGTGATACAAGTCACGTGAAAAGAATTTACTATATCTCCAAGTCAGTCAAAGATGCTCTGGAGTTGAACTTCTCAGTTGGGCAGCAACTTAAAATAACTTCTGTTGGCCTGAAGATTTTTGAAAGACAGACATCATGTGAAGGTAGGTCTGCACCATGTGCTTTCCGGATCACTTCTGAAGGATTGCCCCTTATTCTCCCTCACATCTCCAAACAGATTCTTAGTGCATCTGCTATAGACTTCAAGCATCTTCTGCAGTATAGAACTGTAAAATTTGCAGATTTTGTGGATGCCGAATTTGGTGAAAAGGCTGCAAACCTAATGCCTGGTTGTTGTGTTGTAGTTCTGGGTGAAGGAAGCAGAGCTGCTACAGGGCCCCTCCAAGTGGATGATTCAACAATAGCCATTGGATGCTGGAAGGGTAGAGCAAGTTTGACTATCATGGTTGGTGCATTGGAATGCCAAGAGCTGCTCGAAAGGCTTTTAATGTGTCTAGACACAGTAACAGAAAAGGACTCCTCCATGCATGATAACAAGTACCAGGAACAATTATCTGCTTGCCAGACAGAGATGCTGCGTTGCCATTTCCCTGATTATCACCAGCAGCTAGGTTCTTCTTGTTGA 2472 0.4219 MGRGKRGKSRTQRKHFQQNRENVWTSSKRSKSDPSSENPIPICNPYATQNLAFDHYYKEQGIVSSEEWDAFVQVLRTPLPAAFRINSTSRFSADIRSQLENDFVHSLQAEVAEGEDTEAIIPLPWYPENLAWHSNFSRKQLRKNQTLGRFHEFLKLENEIGNITRQEVVSMAPPLFLDVHSNHFVLDMCAAPGSKTFQLLEILHKLTKAGSLPDGMVIANDLDIQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCLLNRNYDKMEPDQQDQLLFDRVLCDVPCSGDGTLRKAPDLWRKWNAGTGNGLHNLQVLIAMRGVSLLKVGGKMIYSTCSMNPIENEAVVAEVLRRGGGSIELVDVSSELPQLIRRPGLKRWKVCDKGKWFFCCKDVPKLRRNVVFPSMFPNGGNYKDDSDCNISIGDDIIIDDVYGNSEDDVQAVENPVMHEFTEEVSDFPLERCMRLVPHDQNTGAFFIAVLQKVSPLPATQVKPRKEVDKHDDTANQGNEDAQELQVNPLESTPEEISEANINDNRPKTDLKVSSVTCEEVNLKEAQDPCNVENMTKNTPGKRKLQIQGKWRGIDPVVFFKDEVVINSIKVFYGIDEQFPFNGHLVTRNSDTSHVKRIYYISKSVKDALELNFSVGQQLKITSVGLKIFERQTSCEGRSAPCAFRITSEGLPLILPHISKQILSASAIDFKHLLQYRTVKFADFVDAEFGEKAANLMPGCCVVVLGEGSRAATGPLQVDDSTIAIGCWKGRASLTIMVGALECQELLERLLMCLDTVTEKDSSMHDNKYQEQLSACQTEMLRCHFPDYHQQLGSSC* 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1482 823 MobiDBLite consensus disorder prediction 488 510 - -
Gso13g1482 823 Pfam 16S rRNA methyltransferase RsmB/F 176 351 IPR001678 GO:0008168
Gso13g1482 823 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 71 481 IPR001678 GO:0008168
Gso13g1482 823 MobiDBLite consensus disorder prediction 1 42 - -
Gso13g1482 823 PRINTS RNA (C5-cytosine) methyltransferase signature 186 196 IPR023267 GO:0001510
Gso13g1482 823 PRINTS RNA (C5-cytosine) methyltransferase signature 275 287 IPR023267 GO:0001510
Gso13g1482 823 PRINTS RNA (C5-cytosine) methyltransferase signature 325 341 IPR023267 GO:0001510
Gso13g1482 823 PRINTS RNA (C5-cytosine) methyltransferase signature 463 480 IPR023267 GO:0001510
Gso13g1482 823 PANTHER TRNA (CYTOSINE(34)-C(5))-METHYLTRANSFERASE-RELATED 1 794 - -
Gso13g1482 823 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 55 481 IPR029063 -
Gso13g1482 823 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 132 153 IPR023270 GO:0016428
Gso13g1482 823 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 359 378 IPR023270 GO:0016428
Gso13g1482 823 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 646 658 IPR023270 GO:0016428
Gso13g1482 823 MobiDBLite consensus disorder prediction 490 505 - -
Gso13g1482 823 ProSitePatterns NOL1/NOP2/sun family signature. 274 285 IPR018314 GO:0003723|GO:0008168
Gso13g1482 823 MobiDBLite consensus disorder prediction 18 42 - -
Gso13g1482 823 Gene3D Vaccinia Virus protein VP39 48 389 IPR029063 -
Gso13g1482 823 PANTHER NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 1 794 IPR023267 GO:0001510
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1482 Gso-Chr13 30318233 30326950 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1482 K15334 - gmx:100808598 1597.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0137 18 1158508 1162386 Gso13g1482 13 30318233 30326950 GST
Gso5g1496 5 38421364 38429020 Gso13g1482 13 30318233 30326950 PCT
Gso8g1126 8 10345358 10352285 Gso13g1482 13 30318233 30326950 PCT