Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1479 ATGATGAAGTGTTTCTCGGTGTCCTTATCCTCTTTATGGGTTCTCCTTGCTCTCTGTTCTCTGAGTGTGTTATCGCAAAATATATCTCAGAGTGGCCTACAGCAAGCTAGCCTCCCACCAAGAGGTTGGAATTCCTATGATTCCTTTTGCTGGACGATTTCTGAAGAAGAATTCTTACAAAGTGCTGAAATAGTTTCTCAACGTCTCAAGGCTCATGGATATCAGTTTGTCGTGGTGGATTACCTCTGGTATAGGAAGAAAGTCACGGGTGCTTATCCTGATTCTCTTGGATTTGACGTGATTGATGAATGGGGAAGGATGCTCCCTGACCCAGGAAGGTGGCCTTCTTCCATAGGCGGGAAGGGATTCAGTGATGTAGCTAATAGAGTACATAGTTTAGGTTTGAAGTTTGGGATTCATGTTATGAGAGGGATAAGCACACAAGCTGTCAATGCAAACACCCCTATCCTAGATACAACAAAGGGAGGTGCTTATCAAGAATCTGGTCGAGTGTGGCGTGCAAAAGACATAGCAATGCCAGAAAGGGCTTGTGCATGGATGCCTCACGGTTTCATGAGTGTAAATACGAAGTTGGGAGCAGGGAGAGCTTTTTTGAAATCCCTTTATGAGCAGTATGCTGCATGGGGTGTTGATCTTGTGAAACATGATTGTGTGTTTGGTGATGACTTGGATTTAAATGAAATAAGCTATGTGTCTGAGGTTCTCAGCGAGCTTAATCGCCCTATTGTGTATTCTCTGTCTCCCGGAACCAGTGTGACACCAGCCATGGCCAAGGATGTCAGTGGACTAGTTAACATGTATAGAATAACAGGAGATGACTGGGATTTATGGGAGGACGTCAAGGCTCATTTTGATGTAACAAGGGATTTTTCTACAGCTAATATGATAGGAGGAAAAGGTTTAAAGGGAAATTCCTGGCCTGATTTGGACATGCTACCATTTGGATGGCTAACTGATCCAGGATCAAATGAAGGTCCACACAGGTTTAGTAAACTCACTCTAGAAGAAAAAAGGACACAGATGACTTTGTGGTCTTTGGCGAAGTCTCCCCTTATGTATGGGGGGGATGTGAGGAAGATTGATGCAACCACATATGAACTTATCACAAATCCTACCCTGCTAGAGATTAATTACTTCAGCTCAAACAATATGGAGTTTCCTTACGTCACAAGCTCAATTAACTTGAAGCACCCTGGAGGGAAAAAAAGAAGACCTAAGAAAGGAATAAAAGCATCATTTACACATTCATTGGGTTTGACTGGCTGCAGTGAATCAAAGGCGAGTGGTTGGTCTATTGAAAGTCTTAACCAAGATCTTGAAAGAATCTGTTGGAAAAATGGTTTAGAAAACAAGCATCAGGCCACTTTCTGCGTACACAAAAGAGAACTTCAATTCAGATTAGATGGGGTGAGTATGTATCCAGCAGACTATCGAGGGAAACATCAATTAGTTGCAACTGACAGAATGAAATTTTGCTTGGATGCTTCTCCAAAACGAAAGGTTACTTCTAGAGAGTTCAGGAGAGGTACATTTTCTCCATGCAGATGGGATTCAAATCAGATCTGGGAACTGAACTCCAATGGGACCATGGTAAATAGTTACTCCGGTCTTTGTGCAACTGTAGAGTATGTTGAAGCAAATGTTAATTCTGGTGGGATTCGCTCTTGGATCGCAACAGGAAGAACAGGGGAAATCTATCTTGCTTTCTTCAATCTAAGCGAACAGAAGACGGAGATATATGCAAAGACATCATATCTGGCTAAGGTTCTTCCTGACAAAAGCATCACTTCATGCAAGGGCAAGGAAGTGTGGAGTGGAACAGACGTAATAACGACGCAGGGGACGATATCAATGAACGTGGAAATTCATGGATGTGCACTATTTCTTCTAAATTGCAACTAG 1923 0.4254 MMKCFSVSLSSLWVLLALCSLSVLSQNISQSGLQQASLPPRGWNSYDSFCWTISEEEFLQSAEIVSQRLKAHGYQFVVVDYLWYRKKVTGAYPDSLGFDVIDEWGRMLPDPGRWPSSIGGKGFSDVANRVHSLGLKFGIHVMRGISTQAVNANTPILDTTKGGAYQESGRVWRAKDIAMPERACAWMPHGFMSVNTKLGAGRAFLKSLYEQYAAWGVDLVKHDCVFGDDLDLNEISYVSEVLSELNRPIVYSLSPGTSVTPAMAKDVSGLVNMYRITGDDWDLWEDVKAHFDVTRDFSTANMIGGKGLKGNSWPDLDMLPFGWLTDPGSNEGPHRFSKLTLEEKRTQMTLWSLAKSPLMYGGDVRKIDATTYELITNPTLLEINYFSSNNMEFPYVTSSINLKHPGGKKRRPKKGIKASFTHSLGLTGCSESKASGWSIESLNQDLERICWKNGLENKHQATFCVHKRELQFRLDGVSMYPADYRGKHQLVATDRMKFCLDASPKRKVTSREFRRGTFSPCRWDSNQIWELNSNGTMVNSYSGLCATVEYVEANVNSGGIRSWIATGRTGEIYLAFFNLSEQKTEIYAKTSYLAKVLPDKSITSCKGKEVWSGTDVITTQGTISMNVEIHGCALFLLNCN* 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1479 640 PRINTS Glycosyl hydrolase family 27 signature 33 52 IPR002241 GO:0004553|GO:0005975
Gso5g1479 640 PRINTS Glycosyl hydrolase family 27 signature 127 148 IPR002241 GO:0004553|GO:0005975
Gso5g1479 640 PRINTS Glycosyl hydrolase family 27 signature 342 363 IPR002241 GO:0004553|GO:0005975
Gso5g1479 640 SUPERFAMILY Ricin B-like lectins 491 567 IPR035992 -
Gso5g1479 640 PANTHER ALPHA-GALACTOSIDASE 7 637 - -
Gso5g1479 640 SUPERFAMILY Glycosyl hydrolase domain 556 637 - -
Gso5g1479 640 SUPERFAMILY (Trans)glycosidases 36 385 IPR017853 -
Gso5g1479 640 CDD GH27 39 384 IPR002241 GO:0004553|GO:0005975
Gso5g1479 640 Gene3D Aldolase class I 30 387 IPR013785 -
Gso5g1479 640 Gene3D - 553 639 IPR013780 -
Gso5g1479 640 Pfam Alpha galactosidase A 209 384 IPR002241 GO:0004553|GO:0005975
Gso5g1479 640 Pfam Alpha galactosidase C-terminal beta sandwich domain 558 637 IPR041233 -
Gso5g1479 640 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 7 637 IPR002241 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1479 Gso-Chr5 38220866 38226664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1479 14 469 Glycoside Hydrolase AT3G26380 66.812 0.0 652
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1479 - - gmx:100783705 1296.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1479 5 38220866 38226664 Gso8g1107 8 10160513 10166147 GST
Gso5g1479 5 38220866 38226664 Gso13g1502 13 30496517 30501701 PCT