Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1502 ATGAAGTGTTTCTCCTTATCCTCAATTTCTCTTTTCATTCTCCTCTTTCTCTGTTCCGAGAGTGTGTCCTCTCAAAATGTATCCGAGAGTGAGCAGCAGCAAGCTAGCATTCCTCCAAGAGGTTGGAACTCCTATGATTCCTTTTGCTGGACAATTTCTGAAGAAGAATTCTTACAGAGTGCTGAAATAGTTTCTCAACGTCTCCATGATCATGGATACGAGTATGTTGTAGTGGATTACCTCTGGTATAGAAGGAAAGTAGAGGGCGCTTATCATGATTCTCTCGGATTTGATGTGATTGATGAATGGGGGAGGATGGTTCCTGACCCAGGAAGGTGGCCTTCTTCTGAAAATGGGAAAGGATTCACTGAAGTAGCTAATCAAGTACATAGCATGGGTTTAAAATTTGGGATTCATGTCATGAGAGGGATAAGCACACAAGCTGTCAATGCAAACACCCCTATCCTTGATACAACAATGGGAGGTGCTTATCAAGAATCTGGTCGAGTGTGGTATGCAAAAGACATAGCAATCCCGGAAAGGGCTTGTGCATGGATGTCTCATGGTTTCATGAGTGTAAATACAAAGTTGGGAGCTGGGAAAGCCTTTTTGAGATCCCTTTATGAGCAGTATGCTGCATGGGGTGTTGATTTTGTGAAACATGACTGCATATTCGGGGATGACTTTGATTTAAATGAAATAAGCTATGTGTCTGAGGTTCTCAAGGAGTTTGATCGCCCCATTGTATATTCTTTGTCTCCTGGAACCAGTGCGACACCAGCAATGGCCAAGGATGTCAGTGGACTGGTCAATATGTATCGTATAACAGGAGATGACTGGGATACATGGGGGGATGTCAAAGCTCATTTTGATATAACAAGGGATTTTTCGAATGCTAATATGATAGGAGCAAAAGGTTTAATGGGGAACTCCTGGCCTGATCTGGACATGCTACCATTTGGATGGCTAACTGATCCTGGTTCAAATGAAGGTCCACATAGGTATAGTTACCTCAATCTAGAAGAGAAGAAGACACAGATGACTCTGTGGTCGATGGCAAAGTCTCCCCTTATGTATGGAGGGGATGTTCGGAAGATTGATCCTAGCACATATGATGTTATAACAAATCCTACCCTTTTGGAGATTAATTCTTTTAGCTCAAATAACATGGAGTTTCCTTATATCACAAGCGTGAATAGTGAAGATCAGGATCTTGGTAGGCCAATGAGAAGAAGCAGCATGGAAATAAAAACATCCTACACTCATTCATTGGGCCTCACAAGCTGCACTGAGTCAAAGGCCAGCGGTTGGGCTAGTGAAAGTCTTAACCAATACCTTGAAAGAATATGCTGGAAAAGGAGTTTAGGAAACAAGCATCTTGCCCCCTTCTGTGTGCACAAGAGGGAACTTTACTTCCCATTTGATGAAGCGAGTATGTATCAAGAGTATCATCAAAGGAAACATCATTTAGTTGCAACTAACAGAATAAAATTTTGCTTGGATGCTTCTCCAAAACGCAAGCTTACTTCTAAAGAGTTCAAGAGAGGGACATTTTCTCCCTGCAGTTGGGATTCGAATCAGATGTGGGAGTTGAACCCTAATGGGACCCTGGTGAATAGTTATTCTGGCTTGTGTGCAACAGTAGAATCTAGTGAAGATACTATTAATTCTGGTGGCTTGCACTCTTGGATTGCTACAGGAAGAAAAGGAGAAGTCTACGTTGCTTTCTTCAATCTAAGTGAACAGAAGAGGGTAATATCTGCAAAAACATCAGACCTGGCTAAGGTTCTTCCTGGCAGAGACTTCAGTTCTTGTCAGGGCAGTGAAGTGTGGAGTGGAGATGCTATAGAAATAACTCAGGGAACGTTATCAACGGCAGTGGAAGTGCATGGAAGTGCACTAATTGTTCTCAATTGCAACGAGTCCCCCCTCCTTTCCCCAAAAATAGAAAGAAAGAAAGAAAATAAGTAA 1971 0.4226 MKCFSLSSISLFILLFLCSESVSSQNVSESEQQQASIPPRGWNSYDSFCWTISEEEFLQSAEIVSQRLHDHGYEYVVVDYLWYRRKVEGAYHDSLGFDVIDEWGRMVPDPGRWPSSENGKGFTEVANQVHSMGLKFGIHVMRGISTQAVNANTPILDTTMGGAYQESGRVWYAKDIAIPERACAWMSHGFMSVNTKLGAGKAFLRSLYEQYAAWGVDFVKHDCIFGDDFDLNEISYVSEVLKEFDRPIVYSLSPGTSATPAMAKDVSGLVNMYRITGDDWDTWGDVKAHFDITRDFSNANMIGAKGLMGNSWPDLDMLPFGWLTDPGSNEGPHRYSYLNLEEKKTQMTLWSMAKSPLMYGGDVRKIDPSTYDVITNPTLLEINSFSSNNMEFPYITSVNSEDQDLGRPMRRSSMEIKTSYTHSLGLTSCTESKASGWASESLNQYLERICWKRSLGNKHLAPFCVHKRELYFPFDEASMYQEYHQRKHHLVATNRIKFCLDASPKRKLTSKEFKRGTFSPCSWDSNQMWELNPNGTLVNSYSGLCATVESSEDTINSGGLHSWIATGRKGEVYVAFFNLSEQKRVISAKTSDLAKVLPGRDFSSCQGSEVWSGDAIEITQGTLSTAVEVHGSALIVLNCNESPLLSPKIERKKENK* 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1502 656 CDD RICIN 487 567 IPR000772 -
Gso13g1502 656 CDD GH27 38 383 IPR002241 GO:0004553|GO:0005975
Gso13g1502 656 Pfam Alpha galactosidase A 209 383 IPR002241 GO:0004553|GO:0005975
Gso13g1502 656 Pfam Alpha galactosidase A 51 146 IPR002241 GO:0004553|GO:0005975
Gso13g1502 656 PRINTS Glycosyl hydrolase family 27 signature 32 51 IPR002241 GO:0004553|GO:0005975
Gso13g1502 656 PRINTS Glycosyl hydrolase family 27 signature 126 147 IPR002241 GO:0004553|GO:0005975
Gso13g1502 656 PRINTS Glycosyl hydrolase family 27 signature 341 362 IPR002241 GO:0004553|GO:0005975
Gso13g1502 656 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 3 637 IPR002241 GO:0004553|GO:0005975
Gso13g1502 656 Gene3D - 552 640 IPR013780 -
Gso13g1502 656 SUPERFAMILY (Trans)glycosidases 35 383 IPR017853 -
Gso13g1502 656 SUPERFAMILY Glycosyl hydrolase domain 555 637 - -
Gso13g1502 656 Gene3D Aldolase class I 16 385 IPR013785 -
Gso13g1502 656 SUPERFAMILY Ricin B-like lectins 497 563 IPR035992 -
Gso13g1502 656 PANTHER ALPHA-GALACTOSIDASE 3 637 - -
Gso13g1502 656 Pfam Alpha galactosidase C-terminal beta sandwich domain 558 637 IPR041233 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1502 Gso-Chr13 30496517 30501701 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1502 2 469 Glycoside Hydrolase AT3G26380 68.657 0.0 669
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1502 - - gmx:100777954 1337.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1479 5 38220866 38226664 Gso13g1502 13 30496517 30501701 PCT
Gso8g1107 8 10160513 10166147 Gso13g1502 13 30496517 30501701 PCT