Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0397 ATGGCAATGGCAACAATGGGAGAGAGTCCACGAAGCCCAGAAGCGAAGTTGGGGATGCGAGTGGAGGATCTTTGGGACGTTCAGGAGCCACAGTTGAGTCCCACTGAGAAGCTCAACGCTTGTTTTGAAAGCATCCCTGTCTCTGCTTTTCCTTTGGATCCTTCAAACACAGAAATTGAGATTAAATCAGACGCGACCCTAGCAGATGCTGTTAAGATATTGGCGCGACACAACGTATTCAGCGCACCTGTGGTGGATGTTGAGGCGCCTGAAGATGCTAGTTGGATGGATAGATACATCGGAATTGTTGAGTTTGCTGGAATTGTTGTATGGATTTTGCATCAGTCTGAACCTACATCTCCTAGGTGTCCATCCACTCCATCCAGTGCAAGGGCTATTGCAGCTGCAGCTAATGGAGCGGCTTTTGCTCTAGAACTTGAAGCCTTAGGCCTCGGATCTGCTGCAACAACTGCAGGAAACTTTTTTGAGGATCTCACTTCTTCTGAACTTTATAAGAATACCAAGGTTCGTGATATTTCAGGGACATTCCGCTGGGCGCCGTTTCTTGCTTTAGAGAGATCAAACTCATTTCTAACCATGCTCTTGCTGCTTTCTAAGTACAAGATGAAGAGTGTTCCTGTGTTGGATTTAGGCTCTGGTACAATTGATAACATTATTACACAATCTGCTGTGATTCATATGCTGGCAGAATGCGCTGGACTTCAGTGGTTCGAAAGTTGGGGAACCAAGAAGCTATCTGAAGTTGGTCTTCCCCTGGTGACAGGAAATCAAATCATCAAGGTTTATGAGGATGAACCAGTCCTCCAAGCATTTAAAGTAATGAGGAAAAAGAGGGTTGGAGGGGTGCCTGTAATCGAAAGAGAGACCAAAAAGGCAGTTGGTAATATAAGTTTGCGAGACGTTCAATTCTTGCTAACTGCACCAGAAATCTATCATGATTATAGAGGTATTACAGTAAAGAACTTCCTGACTGAGGTTAGAAGCTACTTGGAGAAGAATAAAAATGCATCCCCAATGTTAAGTGAATATGTCACATGCAAAAAGGACTGCACAATCAAAGAATTGATTCAGCTGCTTGATCAAGAGAAGATTCATAGAGTCTATGTAGTGGAGGATGATGGGGATCTGCAAGGACTAATCACACTAAGAGATATCATCTCAAGGCTAGTACACGAACCGCGTGGCTATTTTGGTGATTTCTTTGATGGCGTTCTACCGCTGCCTGCAAACACCAGAGTTTAA 1263 0.441 MAMATMGESPRSPEAKLGMRVEDLWDVQEPQLSPTEKLNACFESIPVSAFPLDPSNTEIEIKSDATLADAVKILARHNVFSAPVVDVEAPEDASWMDRYIGIVEFAGIVVWILHQSEPTSPRCPSTPSSARAIAAAANGAAFALELEALGLGSAATTAGNFFEDLTSSELYKNTKVRDISGTFRWAPFLALERSNSFLTMLLLLSKYKMKSVPVLDLGSGTIDNIITQSAVIHMLAECAGLQWFESWGTKKLSEVGLPLVTGNQIIKVYEDEPVLQAFKVMRKKRVGGVPVIERETKKAVGNISLRDVQFLLTAPEIYHDYRGITVKNFLTEVRSYLEKNKNASPMLSEYVTCKKDCTIKELIQLLDQEKIHRVYVVEDDGDLQGLITLRDIISRLVHEPRGYFGDFFDGVLPLPANTRV* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0397 420 CDD CBS_pair_SF 201 308 - -
Gso5g0397 420 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 8 420 - -
Gso5g0397 420 CDD CBS_pair_SF 264 393 - -
Gso5g0397 420 Gene3D - 37 240 IPR046342 -
Gso5g0397 420 Gene3D - 249 399 IPR046342 -
Gso5g0397 420 PANTHER BNAA06G16460D PROTEIN 8 420 - -
Gso5g0397 420 CDD CBS_pair_SF 61 120 - -
Gso5g0397 420 SUPERFAMILY CBS-domain pair 30 236 IPR046342 -
Gso5g0397 420 ProSiteProfiles CBS domain profile. 259 321 IPR000644 -
Gso5g0397 420 ProSiteProfiles CBS domain profile. 52 119 IPR000644 -
Gso5g0397 420 SMART cbs_1 61 113 IPR000644 -
Gso5g0397 420 SMART cbs_1 349 397 IPR000644 -
Gso5g0397 420 SMART cbs_1 187 236 IPR000644 -
Gso5g0397 420 SMART cbs_1 264 313 IPR000644 -
Gso5g0397 420 ProSiteProfiles CBS domain profile. 346 404 IPR000644 -
Gso5g0397 420 Pfam CBS domain 265 308 IPR000644 -
Gso5g0397 420 Pfam CBS domain 346 397 IPR000644 -
Gso5g0397 420 SUPERFAMILY CBS-domain pair 250 406 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0397 Gso-Chr5 4197922 4201557 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0397 - - gmx:100812388 765.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0397 5 4197922 4201557 Gso17g1094 17 10405593 10409282 GST
Gso5g0397 5 4197922 4201557 Gso4g1649 4 46310706 46314158 PCT
Gso5g0397 5 4197922 4201557 Gso6g1441 6 14355516 14359241 PCT
Gso4g1649 4 46310706 46314158 Gso5g0397 5 4197922 4201557 PCT
Gso6g1441 6 14355516 14359241 Gso5g0397 5 4197922 4201557 PCT