Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0342 ATGGGAATGGAAGAGGAGAGTAGCAACAACAGCAGCATCATAGAAGGTGGTGCTTCGCTGCCATCAACGGGTTCAGACGCCAAGAAGCGAAGAGTGACGTACTTCTACGAGCCCACGATCGGCGATTACTACTACGGTCAGGGGCACCCAATGAAGCCGCACCGAATCCGCATGGCGCACAACCTCATCGTCCACTACTCCCTCCACCGCCGCATGGAGATCAACCGTCCCTTCCCGGCCTCCCCCGCCGACATCCGCCGCTTCCACTCCGACGACTACGTCGACTTTCTCTCCTCCGTCTCCCCCGAGACCCTCGCCGATTCCGCCTTCTCCCGCCACCTCAAGCGCTTCAACGTCGGCGAGGACTGCCCCGTCTTCGACGGCCTCTTCCCCTTCTGCCAGGCCTCCGCCGGCGGCTCCCTCGGCGCCGCCGTCAAACTCAACCGCGCCGACGCCGACATCGCCATCAATTGGGCCGGCGGCCTCCACCACGCCAAGAAGTCCGAGGCCTCTGGATTCTGCTACGTCAACGACATTGTCCTCGGTATCCTCGAACTCCTCAAAGTTCACAGGCGCGTGCTGTATGTTGACATTGATGTTCACCACGGTGATGGTGTTGAGGAGGCCTTTTACACCACTGATAGAGTGATGACAGTGTCTTTCCATAAGTTTGGGGACTTTTTCCCTGGCACAGGACACGTCAAGGACATTGGGGTGGGATCAGGAAAGAATTATGCAGTCAATGTCCCATTAAATGACGGAATGGATGATGAGAGTTTCCGTAGTCTGTTTCGAACCATCATTCAAAAAGTCATGGAGGTCTATCAACCAGAGGCAGTTGTTCTACAATGTGGAGCTGATTCATTGTCTGGGGACAGGTTGGGTTGCTTCAACTTGTCTGTGAGAGGTCATGCAGATTGCCTTCGTTTTCTTAGATCGTTCAATGTTCCTTTAATGGTCTTGGGTGGGGGTGGATATACAATTCGGAATGTTGCCCGTTGTTGGTGTTATGAGACAGCAGTGGCAGTAGGAGTGGAGCCTGATAATAAGTTGCCTTATAATGAATATTATGAATATTTTGGCCCAGATTATACTCTCTATGTCGATCCAAGCAACATGGAGAACCTAAACACACCCAAGGATATGGAAAAAATAAGGAACACACTACTAGAACAGATTTCTCAACTTCCCCATGCTCCCGGTGTACCTTTTCAGACAACACCACCTACCTTACAACTTCCGGAAGAGGCAGAAGAGGACATGGATAGAAGACCTAAACTTCGCAAATGGGATGGTGAAGATTATGATTCTGATCCAGATGAAGGTGGAAAGGCTAATTCCAAGTTTCCAAACGTCACTGACCATATGAGGGACATTACAGATGAAATGGAAGAAGAGAAACCAGAAGTGCATCCATCATCTTGTTGTTGA 1431 0.5108 MGMEEESSNNSSIIEGGASLPSTGSDAKKRRVTYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYSLHRRMEINRPFPASPADIRRFHSDDYVDFLSSVSPETLADSAFSRHLKRFNVGEDCPVFDGLFPFCQASAGGSLGAAVKLNRADADIAINWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHVKDIGVGSGKNYAVNVPLNDGMDDESFRSLFRTIIQKVMEVYQPEAVVLQCGADSLSGDRLGCFNLSVRGHADCLRFLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLYVDPSNMENLNTPKDMEKIRNTLLEQISQLPHAPGVPFQTTPPTLQLPEEAEEDMDRRPKLRKWDGEDYDSDPDEGGKANSKFPNVTDHMRDITDEMEEEKPEVHPSSCC* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0342 476 SUPERFAMILY Arginase/deacetylase 30 395 IPR023696 -
Gso5g0342 476 PRINTS Histone deacetylase superfamily signature 160 183 IPR000286 -
Gso5g0342 476 PRINTS Histone deacetylase superfamily signature 192 207 IPR000286 -
Gso5g0342 476 PRINTS Histone deacetylase superfamily signature 277 287 IPR000286 -
Gso5g0342 476 PANTHER HISTONE DEACETYLASE 6 16 446 - -
Gso5g0342 476 MobiDBLite consensus disorder prediction 1 25 - -
Gso5g0342 476 MobiDBLite consensus disorder prediction 416 443 - -
Gso5g0342 476 PRINTS Histone deacetylase signature 51 68 IPR003084 GO:0004407|GO:0016575
Gso5g0342 476 PRINTS Histone deacetylase signature 84 102 IPR003084 GO:0004407|GO:0016575
Gso5g0342 476 PRINTS Histone deacetylase signature 117 134 IPR003084 GO:0004407|GO:0016575
Gso5g0342 476 PRINTS Histone deacetylase signature 138 158 IPR003084 GO:0004407|GO:0016575
Gso5g0342 476 PRINTS Histone deacetylase signature 179 195 IPR003084 GO:0004407|GO:0016575
Gso5g0342 476 PRINTS Histone deacetylase signature 238 251 IPR003084 GO:0004407|GO:0016575
Gso5g0342 476 PRINTS Histone deacetylase signature 255 273 IPR003084 GO:0004407|GO:0016575
Gso5g0342 476 CDD HDAC_classI 35 342 - -
Gso5g0342 476 MobiDBLite consensus disorder prediction 398 476 - -
Gso5g0342 476 MobiDBLite consensus disorder prediction 398 412 - -
Gso5g0342 476 Pfam Histone deacetylase domain 49 340 IPR023801 -
Gso5g0342 476 PIRSF HDAC_I_euk 13 473 IPR003084 GO:0004407|GO:0016575
Gso5g0342 476 MobiDBLite consensus disorder prediction 1 19 - -
Gso5g0342 476 MobiDBLite consensus disorder prediction 454 476 - -
Gso5g0342 476 Gene3D Histone deacetylase domain 28 403 IPR037138 -
Gso5g0342 476 PANTHER HISTONE DEACETYLASE 16 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0342 Gso-Chr5 3587713 3591936 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0342 K06067 - gmx:100807923 976.467
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0342 5 3587713 3591936 Gso17g0723 17 6639274 6643118 GST
Gso5g0342 5 3587713 3591936 Gso4g1575 4 45295512 45296164 PCT
Gso4g1575 4 45295512 45296164 Gso5g0342 5 3587713 3591936 PCT