Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0723 ATGGGAATGGAAGAGGAGAGTAGCATCATAGAAGGTGGTGCTTCGCTTCCATCGTCGGGTTCAGACGCCAAGAAGCGAAGAGTGACCTACTTCTACGAGCCCACCATCGGCGATTACTACTACGGTCAGGGGCACCCAATGAAGCCGCACCGAATCCGCATGGCGCACAACCTCATCGTCCACTACTCCCTCCACCGCCGCATGGAGATCAACCGCCCCTTCCCGGCCTCCCCCGCCGACATCCGCCGCTTCCACTCCGACGACTACGTCGACTTCCTCTCCTCCGTCTCCCCCGAGACCCTCGCCGATTCCGCCTTCTCTCGTCACCTCAAGCGCTTCAACGTCGGCGAGGACTGCCCCGTCTTCGACGGCCTCTTCCCCTTCTGCCAGGCCTCCGCCGGTGGCTCCCTTGGCGCCGCCGTCAAACTCAACCGCGCTGACGCCGACATCGCCATCAATTGGGCCGGCGGCCTCCATCATGCCAAGAAGTCTGAGGCCTCTGGATTCTGCTACGTCAACGACATTGTCCTCGGCATCCTCGAACTTCTCAAGGCTCACAGGCGTGTGCTGTATGTTGACATTGATGTTCACCATGGTGATGGTGTTGAGGAGGCCTTTTACACCACTGATAGAGTGATGACAGTGTCTTTCCACAAGTTTGGGGACTTTTTCCCTGGCACAGGGCACGTCAAAGACATTGGGGTGGGCTCAGGAAAGAATTATGCAGTAAATGTCCCATTAAATGATGGAATGGATGATGAGAGTTTCCGTAGTCTGTTTCGATCCATCATTCAAAAAGTCATGGAGGTTTATCAACCTGAGGCAGTTGTTCTACAATGTGGAGCTGATTCATTGTCTGGTGACAGATTGGGTTGCTTCAACTTGTCTGTGAGAGGTCATGCAGATTGCCTTCGTTTTCTTAGATCGTTCAATGTTCCTTTAATGGTCTTGGGTGGGGGTGGATATACAATTCGGAATGTTGCCCGTTGTTGGTGTTATGAGACAGCAGTGGCAGTAGGAGTGGAGCCTGATAATAAGTTGCCTTATAATGAATATTATGAATATTTTGGCCCAGATTATACTCTCTATGTCGATCCAAGCAACATGGAGAACCTAAACACATCCAAGGATTTGGAAAAATTAAGGAACACACTACTAGAACAGATTTCCCGACTTCCACATGCTCCCAGTGTACCTTTTCAGACAACACCACCTACCTTGCAACTTCCGGAAGAGGCGGAAGAGAACATGGATAGAAGACCAAAACTTCGCAAATGGGATGGTGAAGATTATGATTCTGATCCCGAAGAAGGTGGAAAGGATAATTCCAAGTTCTCAAACATCACTGCCCATATGAGGGACATTGCAGATGAAATGGAAGAAGAGAAGCCAGAAGAGCATCCATCATCTTGTAGTTGA 1419 0.506 MGMEEESSIIEGGASLPSSGSDAKKRRVTYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYSLHRRMEINRPFPASPADIRRFHSDDYVDFLSSVSPETLADSAFSRHLKRFNVGEDCPVFDGLFPFCQASAGGSLGAAVKLNRADADIAINWAGGLHHAKKSEASGFCYVNDIVLGILELLKAHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHVKDIGVGSGKNYAVNVPLNDGMDDESFRSLFRSIIQKVMEVYQPEAVVLQCGADSLSGDRLGCFNLSVRGHADCLRFLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLYVDPSNMENLNTSKDLEKLRNTLLEQISRLPHAPSVPFQTTPPTLQLPEEAEENMDRRPKLRKWDGEDYDSDPEEGGKDNSKFSNITAHMRDIADEMEEEKPEEHPSSCS* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0723 472 PANTHER HISTONE DEACETYLASE 6 12 442 - -
Gso17g0723 472 MobiDBLite consensus disorder prediction 395 409 - -
Gso17g0723 472 PRINTS Histone deacetylase superfamily signature 156 179 IPR000286 -
Gso17g0723 472 PRINTS Histone deacetylase superfamily signature 188 203 IPR000286 -
Gso17g0723 472 PRINTS Histone deacetylase superfamily signature 273 283 IPR000286 -
Gso17g0723 472 Gene3D Histone deacetylase domain 24 399 IPR037138 -
Gso17g0723 472 CDD HDAC_classI 31 338 - -
Gso17g0723 472 Pfam Histone deacetylase domain 45 336 IPR023801 -
Gso17g0723 472 PIRSF HDAC_I_euk 12 470 IPR003084 GO:0004407|GO:0016575
Gso17g0723 472 PRINTS Histone deacetylase signature 47 64 IPR003084 GO:0004407|GO:0016575
Gso17g0723 472 PRINTS Histone deacetylase signature 80 98 IPR003084 GO:0004407|GO:0016575
Gso17g0723 472 PRINTS Histone deacetylase signature 113 130 IPR003084 GO:0004407|GO:0016575
Gso17g0723 472 PRINTS Histone deacetylase signature 134 154 IPR003084 GO:0004407|GO:0016575
Gso17g0723 472 PRINTS Histone deacetylase signature 175 191 IPR003084 GO:0004407|GO:0016575
Gso17g0723 472 PRINTS Histone deacetylase signature 234 247 IPR003084 GO:0004407|GO:0016575
Gso17g0723 472 PRINTS Histone deacetylase signature 251 269 IPR003084 GO:0004407|GO:0016575
Gso17g0723 472 MobiDBLite consensus disorder prediction 392 472 - -
Gso17g0723 472 SUPERFAMILY Arginase/deacetylase 26 391 IPR023696 -
Gso17g0723 472 MobiDBLite consensus disorder prediction 412 441 - -
Gso17g0723 472 MobiDBLite consensus disorder prediction 451 472 - -
Gso17g0723 472 MobiDBLite consensus disorder prediction 1 22 - -
Gso17g0723 472 PANTHER HISTONE DEACETYLASE 12 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0723 Gso-Chr17 6639274 6643118 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0723 K06067 - gmx:100819221 943.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0342 5 3587713 3591936 Gso17g0723 17 6639274 6643118 GST
Gso17g0723 17 6639274 6643118 Gso4g1575 4 45295512 45296164 PCT
Gso4g1575 4 45295512 45296164 Gso17g0723 17 6639274 6643118 PCT