Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1575 ATGGCAACAAGGGAGAGAGCAGAAATAGAGAATGGTGTTTCATTACCATCTGTGGGTATGGATGCAAATAAGCGTAGAGTGACATATTTCTACAAACCGAACATCGACGCCCACTATCATGGTGAAGAGTACCCAATGAATCCTTTTCGTGTTGACATTACCCACAACCTCATCGTCCACTATGGGCTACATCGACTCATGCAAATCAATCGCCCTTTCCTTGCCGACAAGGTTGACATTGCCCGCTTCCATTCCGATGACTATGTCGAGTTCCTGTCCACTGTTTCACCACAGATCCTTGCTGAAAACTTTGATTCCAACTATTGCCAACTTAAGCGCTTCAACATCGGTGGGGATTTCCCTATCTTGAACGGCCTTTTCGACTTTTGTCGTGTCTCTGCTGGCGGCTCTATCGGTGCTGCTGTTTGCCTAAACTGCTCCAATGCCGACATCACCATCAATTGGGCTGGGGGTTGGCACCATGCTAAAAAGACTAAAGCCTCTGGATTTTGCTACGTCAACGACATTGTTCTTGGCATTCTTGAACTTCTCAAAGTTCATAGGGTATTTTTCTTTTCCTTT 582 0.457 MATRERAEIENGVSLPSVGMDANKRRVTYFYKPNIDAHYHGEEYPMNPFRVDITHNLIVHYGLHRLMQINRPFLADKVDIARFHSDDYVEFLSTVSPQILAENFDSNYCQLKRFNIGGDFPILNGLFDFCRVSAGGSIGAAVCLNCSNADITINWAGGWHHAKKTKASGFCYVNDIVLGILELLKVHRVFFFSF 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1575 194 PRINTS Histone deacetylase signature 46 63 IPR003084 GO:0004407|GO:0016575
Gso4g1575 194 PRINTS Histone deacetylase signature 79 97 IPR003084 GO:0004407|GO:0016575
Gso4g1575 194 PRINTS Histone deacetylase signature 114 131 IPR003084 GO:0004407|GO:0016575
Gso4g1575 194 PRINTS Histone deacetylase signature 135 155 IPR003084 GO:0004407|GO:0016575
Gso4g1575 194 PRINTS Histone deacetylase signature 176 192 IPR003084 GO:0004407|GO:0016575
Gso4g1575 194 Pfam Histone deacetylase domain 45 190 IPR023801 -
Gso4g1575 194 PANTHER HISTONE DEACETYLASE 6 11 191 - -
Gso4g1575 194 SUPERFAMILY Arginase/deacetylase 26 191 IPR023696 -
Gso4g1575 194 PANTHER HISTONE DEACETYLASE 11 191 - -
Gso4g1575 194 Gene3D Histone deacetylase domain 16 192 IPR037138 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1575 Gso-Chr4 45295512 45296164 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1575 K06067 - gsj:114408209 407.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0342 5 3587713 3591936 Gso4g1575 4 45295512 45296164 PCT
Gso17g0723 17 6639274 6643118 Gso4g1575 4 45295512 45296164 PCT
Gso4g1575 4 45295512 45296164 Gso5g0342 5 3587713 3591936 PCT
Gso4g1575 4 45295512 45296164 Gso17g0723 17 6639274 6643118 PCT