Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0329 ATGAAACTCATACCTGTCAGACAATCTGCAATGGGTTCCATTTGGATGTGCCATTTCTTTCTGTTATTGTCCATACTTGGTACTACCTTTATTGCAACTACGGCCAATAATGCAACAGATTCCTACTGGCTTCACAGAATTAAATCAGAACTTGTAGATCCATTTGGTGCCCTTAGCAACTGGTCTTCAACAACTCAAGTCTGCAACTGGAATGGAATAACATGTGCAGTTGATCAGGAACATATTATAGGCCTGAATCTGTCTGGTTCAGGAATATCAGGTTCCATTTCAGCTGAGTTAAGTCACTTCACTTCTCTTCGAACACTTGATTTGTCTTCAAATTCACTTTCTGGCTCCATCCCTTCAGAGCTGGGTCAGCTTCAAAATCTAAGAATATTGCAACTACACTCAAATGATCTCTCCGGAAATATTCCTTCAGAGATTGGTAACTTGAGGAAGTTGCAAGTTCTTAGAATAGGAGACAACATGTTGACAGGTGAAATTCCACCTAGTGTTGCCAATATGAGTGAATTGACAGTGTTGACTCTAGGCTACTGCCACTTGAATGGAAGCATACCCTTTGGAATTGGTAAATTGAAGCATCTAATATCACTTGATTTGCAGATGAACAGCCTTAGTGGCCCCATACCTGAAGAAATTCAAGGCTGCGAAGAGCTCCAAAACTTTGCAGCATCAAACAACATGCTTGAAGGAGACTTACCTTCCTCTATGGGGTCTCTTAAATCTTTGAAAATTCTGAATCTGGTCAATAACAGTTTATCTGGATCAATTCCTACAGCTTTGAGCCATCTTTCTAACTTGACATACCTGAATTTGCTTGGAAACAAACTACATGGAGAGATTCCTTCTGAGCTTAATAGTCTGATTCAGTTGCAGAAGCTTGACTTGTCCAAAAACAACCTTTCTGGATCAATACCTCTCCTTAATGTAAAATTGCAAAGTCTTGAAACTCTTGTTTTGTCTGATAATGCTCTGACAGGTAGCATTCCAAGTAACTTCTGCCTCAGAGGTTCAAAGCTTCAGCAGCTTTTCTTGGCTAGAAACATGCTCTCTGGCAAGTTTCCCTTGGAGTTACTCAACTGCTCCTCAATCCAACAGTTGGACCTTTCTGATAACAGCTTTGAAGGAGAACTTCCTTCCAGCTTGGACAAACTGCAGAACCTCACAGATCTTGTGCTCAACAACAACAGTTTTGTTGGATCTTTACCTCCTGAAATTGGCAACATTAGTAGCTTGGAAAGTCTTTTCCTATTTGGTAACTTCTTCAAAGGTAAAATTCCGTTGGAGATTGGAAGGCTGCAGAGATTGAGCTCCATTTACCTCTATGACAACCAGATTTCTGGACCCATACCAAGGGAGTTAACAAACTGCACAAGCTTAAAGGAAGTCGACTTCTTTGGAAATCACTTCACAGGGCCAATTCCAGAAACTATAGGTAAGCTCAAGGGTTTGGTTGTTCTTCATCTTAGGCAGAATGACTTGTCTGGTCCAATCCCACCAAGCATGGGATACTGTAAAAGCCTTCAGATATTGGCCTTAGCAGATAACATGTTGTCTGGTTCCATTCCACCCACTTTCAGTTACCTCTCAGAACTCACTAAAATTACCCTTTACAATAACTCCTTTGAAGGACCTATCCCTCATTCACTCTCTTCCCTCAAAAGCCTCAAAATCATAAACTTTTCACACAACAAGTTCAGTGGAAGTTTCTTTCCTCTCACTGGTTCAAATTCCCTGACCCTTCTGGACCTGACTAACAACAGCTTCTCAGGTCCCATCCCTTCCACTCTAACCAATTCTAGAAACCTCAGCCGTCTCAGACTTGGAGAAAATTATCTCACAGGAAGCATTCCTTCTGAATTTGGCCACCTTACTGTTCTCAACTTTCTTGATTTATCATTCAACAATTTAACAGGAGAAGTGCCACCTCAACTCTCAAACTCCAAGAAAATGGAACACATGTTGATGAATAACAACGGGTTGAGTGGAAAAATACCTGATTGGTTGGGAAGCTTACAAGAACTTGGTGAGCTAGATCTCTCATACAATAACTTCCGTGGTAAGATACCTTCTGAGCTTGGTAACTGCTCAAAACTACTCAAGCTTTCTCTCCATCACAATAATCTCTCTGGTGAAATCCCCCAAGAGATTGGAAACCTCACTTCCCTCAATGTCCTCAATTTGCAAAGAAACAGCTTCTCTGGCATAATTCCTCCGACAATTCAGCGATGCACAAAGCTGTATGAGCTCAGGCTCTCAGAAAACTTGTTAACAGGTGCTATACCAGTTGAGCTAGGAGGGCTAGCTGAGTTGCAAGTGATATTGGACTTGAGTAAAAATCTCTTCACTGGTGAGATTCCACCATCTCTAGGAAACCTCATGAAGCTAGAGAGACTCAACCTCTCTTTCAACCAACTTGAAGGAAAAGTTCCTCCTTCACTTGGCAGACTCACAAGCCTGCACGTGCTGAATCTCTCAAACAACCACCTTGAAGGCCAGATTCCTTCAATATTTTCAGGATTCCCACTAAGCTCATTCCTGAACAATAACGGCTTGTGTGGCCCACCTTTGAGTTCGTGCTCCGAATCCACGGCACAGGGGAAAATGCAGCTATCAAACACACAAGTGGCAGTAATCATTGTGGCCATTGTCTTTACTTCCACAGTGATATGCTTAGTGATGCTGTATATAATGCTCAGGATCTGGTGCAACTGGAGAAAAGTGGCAATTTCAAGTGCAGAGGGTGGTGGCACTGTTGCTCACAAGACCAGGAATGGAGAGTATTGGAATATGAATTCCTTTGGGTTCATTCCTTCACCAGATAAGCAGAATTCAGCAGCAACAACAACTTCATTCTACAATCTCAAAATGGAAACCATGGAAAATACAAGTATGTAA 2919 0.418 MKLIPVRQSAMGSIWMCHFFLLLSILGTTFIATTANNATDSYWLHRIKSELVDPFGALSNWSSTTQVCNWNGITCAVDQEHIIGLNLSGSGISGSISAELSHFTSLRTLDLSSNSLSGSIPSELGQLQNLRILQLHSNDLSGNIPSEIGNLRKLQVLRIGDNMLTGEIPPSVANMSELTVLTLGYCHLNGSIPFGIGKLKHLISLDLQMNSLSGPIPEEIQGCEELQNFAASNNMLEGDLPSSMGSLKSLKILNLVNNSLSGSIPTALSHLSNLTYLNLLGNKLHGEIPSELNSLIQLQKLDLSKNNLSGSIPLLNVKLQSLETLVLSDNALTGSIPSNFCLRGSKLQQLFLARNMLSGKFPLELLNCSSIQQLDLSDNSFEGELPSSLDKLQNLTDLVLNNNSFVGSLPPEIGNISSLESLFLFGNFFKGKIPLEIGRLQRLSSIYLYDNQISGPIPRELTNCTSLKEVDFFGNHFTGPIPETIGKLKGLVVLHLRQNDLSGPIPPSMGYCKSLQILALADNMLSGSIPPTFSYLSELTKITLYNNSFEGPIPHSLSSLKSLKIINFSHNKFSGSFFPLTGSNSLTLLDLTNNSFSGPIPSTLTNSRNLSRLRLGENYLTGSIPSEFGHLTVLNFLDLSFNNLTGEVPPQLSNSKKMEHMLMNNNGLSGKIPDWLGSLQELGELDLSYNNFRGKIPSELGNCSKLLKLSLHHNNLSGEIPQEIGNLTSLNVLNLQRNSFSGIIPPTIQRCTKLYELRLSENLLTGAIPVELGGLAELQVILDLSKNLFTGEIPPSLGNLMKLERLNLSFNQLEGKVPPSLGRLTSLHVLNLSNNHLEGQIPSIFSGFPLSSFLNNNGLCGPPLSSCSESTAQGKMQLSNTQVAVIIVAIVFTSTVICLVMLYIMLRIWCNWRKVAISSAEGGGTVAHKTRNGEYWNMNSFGFIPSPDKQNSAATTTSFYNLKMETMENTSM* 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0329 972 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 463 726 - -
Gso5g0329 972 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 216 509 - -
Gso5g0329 972 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 585 911 - -
Gso5g0329 972 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 85 389 - -
Gso5g0329 972 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 39 241 - -
Gso5g0329 972 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 345 628 - -
Gso5g0329 972 Pfam Leucine Rich Repeat 105 125 IPR001611 GO:0005515
Gso5g0329 972 Pfam Leucine Rich Repeat 802 823 IPR001611 GO:0005515
Gso5g0329 972 Pfam Leucine Rich Repeat 826 848 IPR001611 GO:0005515
Gso5g0329 972 SUPERFAMILY L domain-like 344 656 - -
Gso5g0329 972 Gene3D Ribonuclease Inhibitor 483 580 IPR032675 -
Gso5g0329 972 Gene3D Ribonuclease Inhibitor 37 194 IPR032675 -
Gso5g0329 972 ProSiteProfiles Leucine-rich repeat profile. 105 127 IPR001611 GO:0005515
Gso5g0329 972 SMART LRR_typ_2 392 416 IPR003591 -
Gso5g0329 972 SMART LRR_typ_2 199 222 IPR003591 -
Gso5g0329 972 SMART LRR_typ_2 271 295 IPR003591 -
Gso5g0329 972 SMART LRR_typ_2 247 270 IPR003591 -
Gso5g0329 972 SMART LRR_typ_2 103 127 IPR003591 -
Gso5g0329 972 SMART LRR_typ_2 727 751 IPR003591 -
Gso5g0329 972 SMART LRR_typ_2 319 343 IPR003591 -
Gso5g0329 972 SMART LRR_typ_2 440 464 IPR003591 -
Gso5g0329 972 SMART LRR_typ_2 151 175 IPR003591 -
Gso5g0329 972 SMART LRR_typ_2 679 703 IPR003591 -
Gso5g0329 972 SMART LRR_typ_2 775 800 IPR003591 -
Gso5g0329 972 SMART LRR_typ_2 824 847 IPR003591 -
Gso5g0329 972 SMART LRR_typ_2 631 655 IPR003591 -
Gso5g0329 972 SMART LRR_typ_2 488 512 IPR003591 -
Gso5g0329 972 ProSiteProfiles Leucine-rich repeat profile. 297 319 IPR001611 GO:0005515
Gso5g0329 972 Gene3D Ribonuclease Inhibitor 195 288 IPR032675 -
Gso5g0329 972 Gene3D Ribonuclease Inhibitor 385 482 IPR032675 -
Gso5g0329 972 SUPERFAMILY RNI-like 85 406 - -
Gso5g0329 972 Pfam Leucine rich repeat N-terminal domain 40 75 IPR013210 -
Gso5g0329 972 Gene3D Ribonuclease Inhibitor 289 384 IPR032675 -
Gso5g0329 972 Gene3D Ribonuclease Inhibitor 581 875 IPR032675 -
Gso5g0329 972 PRINTS Leucine-rich repeat signature 298 311 - -
Gso5g0329 972 PRINTS Leucine-rich repeat signature 824 837 - -
Gso5g0329 972 SUPERFAMILY RNI-like 584 849 - -
Gso5g0329 972 PANTHER FLAGELLIN-SENSING-LIKE PROTEIN 216 509 - -
Gso5g0329 972 PANTHER FLAGELLIN-SENSING-LIKE PROTEIN 463 726 - -
Gso5g0329 972 PANTHER FLAGELLIN-SENSING-LIKE PROTEIN 85 389 - -
Gso5g0329 972 PANTHER FLAGELLIN-SENSING-LIKE PROTEIN 39 241 - -
Gso5g0329 972 PANTHER FLAGELLIN-SENSING-LIKE PROTEIN 585 911 - -
Gso5g0329 972 PANTHER FLAGELLIN-SENSING-LIKE PROTEIN 345 628 - -
Gso5g0329 972 Pfam Leucine rich repeat 585 644 IPR001611 GO:0005515
Gso5g0329 972 Coils Coil 969 972 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0329 Gso-Chr5 3412325 3415668 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0329 53 889 Receptor kinase-like Gene Family AT5G46330 35.427 6.83e-131 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0329 - - gmx:100818792 1845.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0329 5 3412325 3415668 Gso17g0739 17 6816357 6819590 GST
Gso5g0329 5 3412325 3415668 Gso4g1560 4 45106008 45109225 PCT
Gso4g1560 4 45106008 45109225 Gso5g0329 5 3412325 3415668 PCT