Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1560 ATGTATGGAATTAGCCTCCCAAAACATACCCTTTGGACCATTTTGTCTTGTGTCAGATTATTTATCATGAAGCTCATATTGATCAAACATTCCGCTATGGATTCCATTTACATGTGCCATTTCATTCTACTACTGACCATAGTGTGCACTGTTGTTGTTGCAACTCTAGGAGATAACACATCAGAATCCTACTGGCTTCTAAGAATTAAATCAGAACTGGTTGATCCATTAGGAGCCCTGAGAAACTGGTCTCCAACAACAACTCAAATTTGTAGCTGGAATGGACTAACATGTGCACTTGATCAGGCACGTGTTGTAGGCCTTAATTTGTCTGGCTCAGGACTATCAGGTTCCATTTCAGGAGAGTTCAGCCACCTCATTTCTCTTCAATCACTTGATTTGTCTTCAAACTCCCTCACAGGCTCAATCCCTTCTGAACTTGGGAAGCTTCAAAATCTAAGAACACTTCTGCTTTACTCAAATTATCTCTCTGGTGCCATTCCTAAAGAGATAGGTAATTTGAGCAAGTTGCAAGTTCTTAGACTAGGAGATAACATGTTGGAAGGTGAAATAACACCTAGTATTGGCAACTTGAGTGAGTTGACAGTGTTTGGTGTAGCCAACTGCAACTTAAATGGAAGCATACCTGTTGAGGTTGGTAAGTTGAAGAATCTTGTGTCTCTTGATTTGCAAGTGAACAGTCTTAGTGGTTACATACCTGAAGAGATTCAAGGCTGTGAAGGGCTCCAAAATTTTGCAGCATCAAACAACATGCTTGAAGGAGAAATACCCTCCTCTTTGGGGTCTCTCAAATCATTGAGAATTCTGAACCTGGCCAATAACACTCTATCAGGATCAATTCCTACCTCTTTGAGTCTTCTCTCCAATTTGACATACCTGAATTTGCTTGGAAACATGTTAAATGGTGAAATTCCTTCAGAGCTTAACAGTTTGAGCCAGCTACAGAAGCTTGACTTATCCAGAAACAGCCTTTCTGGTCCACTAGCCCTCCTCAATGTCAAATTACAGAATCTTGAAACTATGGTTCTGTCTGATAATGCTTTAACAGGTAGTATTCCATATAACTTCTGCCTCAGAGGTTCTAAACTTCAGCAACTGTTCTTAGCTAGGAATAAGCTTTCTGGAAGATTTCCCTTGGAGCTTCTCAACTGCAGCTCAATCCAACAGGTGGACCTTTCTGATAACAGTTTTGAAGGTGAACTTCCATCAAGCCTGGACAAGCTACAGAACCTCACAGATCTTGTGCTCAACAACAACAGCTTCAGTGGATCTCTACCTCCAGGAATTGGAAACATTAGTAGCTTGAGAAGCCTTTTCTTGTTTGGTAACTTTTTCACAGGAAAACTCCCTGTGGAGATTGGAAGGCTTAAGAGGTTGAACACCATTTACCTCTATGATAACCAGATGTCTGGACCTATACCAAGAGAGTTAACAAACTGCACAAGATTAACTGAAATTGACTTCTTTGGAAACCATTTTTCTGGTCCCATTCCAAAGACTATAGGTAAGCTAAAGGACTTAACTATTCTCCATTTAAGGCAAAATGATCTGTCAGGTCCAATCCCACCAAGCATGGGGTACTGTAAAAGGCTTCAGTTATTGGCCTTAGCAGATAACAAGTTGTCAGGTTCCATACCCCCCACATTCAGTTACCTTTCACAAATTAGAACCATTACCCTTTACAACAACTCCTTCGAAGGACCACTACCCGATTCCCTCTCTCTTCTTAGAAACCTTAAAATCATAAACTTTTCCAATAACAAGTTCAGTGGAAGTATCTTTCCTCTGACTGGTTCAAATTCTCTCACTGTTTTGGACTTGACAAACAACAGCTTCTCAGGTTCCATCCCTTCTATTCTAGGCAACTCCAGAGATCTCACGCGTCTCAGACTTGGAAACAATTATCTCACAGGAACCATTCCTTCTGAACTTGGCCACCTCACTGAGCTAAACTTCCTTGATTTGTCATTCAACAACTTGACAGGACATGTGCCACCTCAACTCTCAAACTGCAAGAAAATTGAACACCTTCTACTGAATAATAACAGATTGAGCGGGGAAATGTCGCCTTGGCTGGGAAGCTTACAAGAACTTGGTGAGCTGGATCTCTCATTCAACAACTTTCATGGAAGGGTTCCTCCTGAGCTTGGTGGCTGCTCAAAGTTGCTTAAGCTTTCTCTCCATCACAACAATCTCTCGGGTGAAATCCCGCAAGAGATTGGAAACCTTACTTCACTCAATGTCTTCAACTTGCAAAAGAATGGTCTCTCTGGCCTCATTCCATCAACAATTCAGCAATGCACCAAGCTGTATGAGATAAGGCTCTCAGAGAACTTCCTCTCAGGTACTATACCAGCTGAACTAGGAGGGGTTACTGAGTTACAAGTCATATTGGACTTGAGTAGAAACCACTTTTCTGGTGAGATTCCATCATCTCTTGGAAATCTCATGAAGCTAGAAAGACTTGATCTTTCCTTTAACCATCTTCAAGGACAAGTTCCTCCTTCACTTGGTCAACTTACCAGCCTGCATATGCTAAATCTCTCATATAACCATCTTAATGGCCTCATTCCCTCAACCTTTTCAGGGTTCCCATTAAGCTCCTTTCTGAACAATGACCACTTGTGTGGCCCTCCACTAACATTGTGCTTGGAAGCTACGGGGAAGGAGCGAATGCAGCTATCAAACGCACAAGTAGCAGCAATCATAGTAGCCATTGTCCTTACTTCCACCCTGATATGCTTAGTAATGTTGTATATAATGTTGAGAATCTGGTGCAACTGGATAAAGGTAGCTGTTTCAAGTGAAGATGGTGGCATGGTTGAGCAGCAGAAGACAAGAAATGGAGAGTACTGGAATATGAATTCTCCTGAGTTGTTTCCTTCACCAGATAAACAAATTTCGCCAACAATTTGCATTTGCAGTCTCAAAATTGATGCAGAAGCCCAGGAAAATACCTTGGTCAGATAA 2991 0.4159 MYGISLPKHTLWTILSCVRLFIMKLILIKHSAMDSIYMCHFILLLTIVCTVVVATLGDNTSESYWLLRIKSELVDPLGALRNWSPTTTQICSWNGLTCALDQARVVGLNLSGSGLSGSISGEFSHLISLQSLDLSSNSLTGSIPSELGKLQNLRTLLLYSNYLSGAIPKEIGNLSKLQVLRLGDNMLEGEITPSIGNLSELTVFGVANCNLNGSIPVEVGKLKNLVSLDLQVNSLSGYIPEEIQGCEGLQNFAASNNMLEGEIPSSLGSLKSLRILNLANNTLSGSIPTSLSLLSNLTYLNLLGNMLNGEIPSELNSLSQLQKLDLSRNSLSGPLALLNVKLQNLETMVLSDNALTGSIPYNFCLRGSKLQQLFLARNKLSGRFPLELLNCSSIQQVDLSDNSFEGELPSSLDKLQNLTDLVLNNNSFSGSLPPGIGNISSLRSLFLFGNFFTGKLPVEIGRLKRLNTIYLYDNQMSGPIPRELTNCTRLTEIDFFGNHFSGPIPKTIGKLKDLTILHLRQNDLSGPIPPSMGYCKRLQLLALADNKLSGSIPPTFSYLSQIRTITLYNNSFEGPLPDSLSLLRNLKIINFSNNKFSGSIFPLTGSNSLTVLDLTNNSFSGSIPSILGNSRDLTRLRLGNNYLTGTIPSELGHLTELNFLDLSFNNLTGHVPPQLSNCKKIEHLLLNNNRLSGEMSPWLGSLQELGELDLSFNNFHGRVPPELGGCSKLLKLSLHHNNLSGEIPQEIGNLTSLNVFNLQKNGLSGLIPSTIQQCTKLYEIRLSENFLSGTIPAELGGVTELQVILDLSRNHFSGEIPSSLGNLMKLERLDLSFNHLQGQVPPSLGQLTSLHMLNLSYNHLNGLIPSTFSGFPLSSFLNNDHLCGPPLTLCLEATGKERMQLSNAQVAAIIVAIVLTSTLICLVMLYIMLRIWCNWIKVAVSSEDGGMVEQQKTRNGEYWNMNSPELFPSPDKQISPTICICSLKIDAEAQENTLVR* 997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1560 996 Pfam Leucine rich repeat N-terminal domain 64 98 IPR013210 -
Gso4g1560 996 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 182 509 - -
Gso4g1560 996 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 318 621 - -
Gso4g1560 996 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 484 761 - -
Gso4g1560 996 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 107 363 - -
Gso4g1560 996 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 583 957 - -
Gso4g1560 996 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 63 274 - -
Gso4g1560 996 Pfam Leucine Rich Repeat 825 845 IPR001611 GO:0005515
Gso4g1560 996 Pfam Leucine Rich Repeat 850 871 IPR001611 GO:0005515
Gso4g1560 996 Pfam Leucine Rich Repeat 128 150 IPR001611 GO:0005515
Gso4g1560 996 PRINTS Leucine-rich repeat signature 129 142 - -
Gso4g1560 996 PRINTS Leucine-rich repeat signature 318 331 - -
Gso4g1560 996 SUPERFAMILY RNI-like 398 784 - -
Gso4g1560 996 PANTHER FLAGELLIN-SENSING-LIKE PROTEIN 182 509 - -
Gso4g1560 996 PANTHER FLAGELLIN-SENSING-LIKE PROTEIN 318 621 - -
Gso4g1560 996 PANTHER FLAGELLIN-SENSING-LIKE PROTEIN 107 363 - -
Gso4g1560 996 PANTHER FLAGELLIN-SENSING-LIKE PROTEIN 63 274 - -
Gso4g1560 996 PANTHER FLAGELLIN-SENSING-LIKE PROTEIN 583 957 - -
Gso4g1560 996 PANTHER FLAGELLIN-SENSING-LIKE PROTEIN 484 761 - -
Gso4g1560 996 Gene3D Ribonuclease Inhibitor 556 898 IPR032675 -
Gso4g1560 996 Gene3D Ribonuclease Inhibitor 307 555 IPR032675 -
Gso4g1560 996 SMART LRR_sd22_2 654 686 - -
Gso4g1560 996 SMART LRR_sd22_2 318 347 - -
Gso4g1560 996 SMART LRR_sd22_2 222 248 - -
Gso4g1560 996 SMART LRR_sd22_2 126 155 - -
Gso4g1560 996 SMART LRR_sd22_2 174 200 - -
Gso4g1560 996 SUPERFAMILY L domain-like 804 878 - -
Gso4g1560 996 ProSiteProfiles Leucine-rich repeat profile. 272 294 IPR001611 GO:0005515
Gso4g1560 996 Pfam Leucine rich repeat 608 667 IPR001611 GO:0005515
Gso4g1560 996 SMART LRR_typ_2 126 150 IPR003591 -
Gso4g1560 996 SMART LRR_typ_2 415 439 IPR003591 -
Gso4g1560 996 SMART LRR_typ_2 750 773 IPR003591 -
Gso4g1560 996 SMART LRR_typ_2 654 678 IPR003591 -
Gso4g1560 996 SMART LRR_typ_2 702 726 IPR003591 -
Gso4g1560 996 SMART LRR_typ_2 270 294 IPR003591 -
Gso4g1560 996 SMART LRR_typ_2 222 245 IPR003591 -
Gso4g1560 996 SMART LRR_typ_2 342 366 IPR003591 -
Gso4g1560 996 SMART LRR_typ_2 823 846 IPR003591 -
Gso4g1560 996 SMART LRR_typ_2 511 535 IPR003591 -
Gso4g1560 996 SMART LRR_typ_2 847 870 IPR003591 -
Gso4g1560 996 SMART LRR_typ_2 174 198 IPR003591 -
Gso4g1560 996 SMART LRR_typ_2 318 339 IPR003591 -
Gso4g1560 996 SUPERFAMILY L domain-like 61 360 - -
Gso4g1560 996 Gene3D Ribonuclease Inhibitor 59 209 IPR032675 -
Gso4g1560 996 Gene3D Ribonuclease Inhibitor 210 306 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1560 Gso-Chr4 45106008 45109225 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1560 75 890 Receptor kinase-like Gene Family AT5G46330 33.900 9.41e-121 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1560 - - gmx:100802757 1886.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0329 5 3412325 3415668 Gso4g1560 4 45106008 45109225 PCT
Gso17g0739 17 6816357 6819590 Gso4g1560 4 45106008 45109225 PCT
Gso4g1560 4 45106008 45109225 Gso5g0329 5 3412325 3415668 PCT
Gso4g1560 4 45106008 45109225 Gso17g0739 17 6816357 6819590 PCT