Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0739 ATGAAACTCATACCTGTCAGACATTCTGCAATGGGTTCCATTTGGATGTGCCATTTGTTTCTGTTATTGTCCATACTTTGTACTACTTTTATTGCAACTATGGCCAATAATGCAACAGATTCCTACTTGCTTCTCAAAGTTAAATCAGAATTGGTAGATCCATTAGGGGCCTTTAGCAACTGGTTTCCAACAACTCAATTCTGCAACTGGAATGGAATAACATGTGCAGTTGATCAGGAACATGTTATAGGCCTCAATCTGTCTGGTTCAGGAATATCAGGTTCTATTTCAGTTGAGTTGGGTAACTTCACTTCTCTTCAAACACTTGATTTGTCTTCAAATTCTCTTTCTGGCTCCATCCCTTCAGAACTGGGTCAGCTTCAAAATCTAAGAATATTGCAACTATACTCAAATGATCTCTCTGGGAACATTCCTTCAGAGATAGGTAACTTGAGGAAGTTGCAAGTTCTTAGAATAGGAGACAACATGCTGACAGGTGAAATTCCACCTAGTGTTGCCAATATGAGTGAATTGAAAGTGTTGGCTCTAGGCTACTGCCACTTAAATGGAAGCATACCCTTTGGAATTGGTAAATTGAAGCATCTAATATCTCTTGATGTACAAATGAACAGCATTAATGGCCACATACCTGAAGAGATTGAAGGCTGTGAAGAGCTCCAAAACTTTGCAGCATCAAACAACATGCTTGAAGGAGACTTACCTTCCTCTATGGGGTCTCTTAAATCTTTGAAAATTCTGAATCTGGCCAATAACAGTTTATCTGGATCAATTCCTACAGCTTTGAGTCATCTTTCTAACTTGACATACCTGAATTTGCTAGGAAACAAACTACATGGAGAAATTCCTTCTGAGCTTAATAGTCTGATTCAGATGCAGAAGCTAGACTTATCCAAAAACAACCTCTCTGGATCAATACCTCTTCTTAATGTAAAATTGCAAAGTCTTGAAACTCTTGTTTTGTCTGATAATGCTCTGACAGGTAGCATTCCAAGTAACTTCTGCCTCAGAGGTTCAAAGCTTCAGCAACTTTTCTTGGCTAGAAACATGCTCTCTGGCAAGTTTCCCTTGGAGCTACTCAACTGCTCCTCAATCCAACAGTTGGACCTTTCTGATAACAGCTTTGAAGGAAAACTTCCTTCCATCTTGGACAAACTGCAGAACCTTACAGATCTTGTGCTCAACAACAACAGCTTTGTTGGATCTCTACCTCCTGAAATTGGCAACATTAGTAGCTTGGAAAATCTTTTCCTATTTGGTAACTTCTTCAAAGGTAAAATTCCATTGGAGATTGGAAGGCTGCAGAGGTTGAGCTCCATTTACCTCTATGACAACCAGATGTCTGGACTTATACCAAGGGAGTTAACAAACTGCACAAGCTTAAAGGAAATTGACTTCTTTGGAAATCACTTCACAGGGCCAATTCCAGAAACTATAGGTAAGCTCAAGGACTTAGTTGTTCTTCATCTTAGGCAGAATGACTTGTCTGGTCCAATCCCACCAAGCATGGGATACTGTAAAAGCCTTCAGATATTGGCCTTAGCAGATAACATGTTGTCTGGTTCCATTCCACCCACTTTCAGTTACCTCTCAGAACTCACTAAAATTACCCTTTACAATAACTCCTTTGAAGGACCTATCCCTCATTCACTCTCCTCTCTTAAAAGCCTCAAAATCATAAACTTCTCACACAACAAGTTCAGTGGAAGTTTCTTTCCTCTCACTTGTTCAAATTCCCTGACCCTTCTGGACCTAACTAACAACAGCTTCTCAGGTCCCATCCCTTCCACTCTAGCCAATTCTAGAAACCTCGGCCGTCTCAGACTTGGACAGAATTATCTCACAGGAACCATTCCTTCTGAATTTGGCCAGCTTACTGAGCTCAACTTTCTTGATCTATCATTCAACAATTTAACAGGAGAAGTTCCACCTCAACTCTCAAACTCCAAGAAAATGGAACACATCTTGATGAATAACAACAGGTTGAGTGGTGAAATATCTGATTGGTTGGGAAGCTTACAAGAACTCGGTGAACTAGATCTCTCATACAATAACTTCAGTGGTAAGGTACCTTCTGAGCTTGGTAACTGCTCAAAACTACTCAAGCTTTCTCTCCATCACAACAATCTCTCTGGTGAAATCCCCCAAGAGATTGGAAACCTCACTTCCCTCAATGTCCTCAATTTGCAAAGGAACGGCTTCTCCGGCCTAATTCCTCCGACAATTCAGCAATGCACAAAGCTGTATGAGCTCCGGCTCTCAGAAAACTTGTTAACAGGTGTTATACCAGTTGAGCTAGGAGGGCTAGCTGAGTTGCAAGTTATATTGGACTTGAGTAAAAATCTCTTCACTGGTGAGATTCCACCTTCTCTAGGAAACCTTATGAAGCTAGAGAGACTGAACCTTTCTTTCAACCAACTTGAGGGAAAAGTTCCTTCTTCACTTGGCAAACTCACAAGCCTGCACGTGTTGAATTTATCAAACAACCACCTTGAAGGCAAGATTCCTTCAACATTTTCAGGATTCCCACTAAGCACATTCCTGAACAATAGCGGCTTGTGTGGTCCACCTTTGAGATCATGCTCCGAATCCATGGTGCAGGGAAAAATTCAGCTATCAAACACACAAGTGGCAATAATCATTGTGGCCATTGTCTTTACTTCCACAGTGATATGCTTAGTGATGCTGTATATAATGCTCAGGATCTGGTGCAACTGGAGAAAAGTGACAATTTCAAGTGCAGAGGGTGGTGGCACTGTTGGTCACAAGACAAGAAATGGAGAGTATTGGAATATGAATTCCTTTGGGTTCATCCCTTCACCAGATAAGCAGAATTCAGCAACAACAACTTCATTCTACAATCTCAAAATGGAAACAATGGAAAATACAAATATGTAA 2916 0.4074 MKLIPVRHSAMGSIWMCHLFLLLSILCTTFIATMANNATDSYLLLKVKSELVDPLGAFSNWFPTTQFCNWNGITCAVDQEHVIGLNLSGSGISGSISVELGNFTSLQTLDLSSNSLSGSIPSELGQLQNLRILQLYSNDLSGNIPSEIGNLRKLQVLRIGDNMLTGEIPPSVANMSELKVLALGYCHLNGSIPFGIGKLKHLISLDVQMNSINGHIPEEIEGCEELQNFAASNNMLEGDLPSSMGSLKSLKILNLANNSLSGSIPTALSHLSNLTYLNLLGNKLHGEIPSELNSLIQMQKLDLSKNNLSGSIPLLNVKLQSLETLVLSDNALTGSIPSNFCLRGSKLQQLFLARNMLSGKFPLELLNCSSIQQLDLSDNSFEGKLPSILDKLQNLTDLVLNNNSFVGSLPPEIGNISSLENLFLFGNFFKGKIPLEIGRLQRLSSIYLYDNQMSGLIPRELTNCTSLKEIDFFGNHFTGPIPETIGKLKDLVVLHLRQNDLSGPIPPSMGYCKSLQILALADNMLSGSIPPTFSYLSELTKITLYNNSFEGPIPHSLSSLKSLKIINFSHNKFSGSFFPLTCSNSLTLLDLTNNSFSGPIPSTLANSRNLGRLRLGQNYLTGTIPSEFGQLTELNFLDLSFNNLTGEVPPQLSNSKKMEHILMNNNRLSGEISDWLGSLQELGELDLSYNNFSGKVPSELGNCSKLLKLSLHHNNLSGEIPQEIGNLTSLNVLNLQRNGFSGLIPPTIQQCTKLYELRLSENLLTGVIPVELGGLAELQVILDLSKNLFTGEIPPSLGNLMKLERLNLSFNQLEGKVPSSLGKLTSLHVLNLSNNHLEGKIPSTFSGFPLSTFLNNSGLCGPPLRSCSESMVQGKIQLSNTQVAIIIVAIVFTSTVICLVMLYIMLRIWCNWRKVTISSAEGGGTVGHKTRNGEYWNMNSFGFIPSPDKQNSATTTSFYNLKMETMENTNM* 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0739 971 Pfam Leucine Rich Repeat 826 848 IPR001611 GO:0005515
Gso17g0739 971 Pfam Leucine Rich Repeat 802 824 IPR001611 GO:0005515
Gso17g0739 971 Pfam Leucine Rich Repeat 105 125 IPR001611 GO:0005515
Gso17g0739 971 Gene3D Ribonuclease Inhibitor 315 534 IPR032675 -
Gso17g0739 971 SUPERFAMILY L domain-like 344 648 - -
Gso17g0739 971 Pfam Leucine rich repeat N-terminal domain 39 75 IPR013210 -
Gso17g0739 971 Pfam Leucine rich repeat 233 284 IPR001611 GO:0005515
Gso17g0739 971 Pfam Leucine rich repeat 729 788 IPR001611 GO:0005515
Gso17g0739 971 Gene3D Ribonuclease Inhibitor 195 314 IPR032675 -
Gso17g0739 971 Gene3D Ribonuclease Inhibitor 37 194 IPR032675 -
Gso17g0739 971 PANTHER FLAGELLIN-SENSING-LIKE PROTEIN 173 506 - -
Gso17g0739 971 PANTHER FLAGELLIN-SENSING-LIKE PROTEIN 585 911 - -
Gso17g0739 971 PANTHER FLAGELLIN-SENSING-LIKE PROTEIN 67 242 - -
Gso17g0739 971 PANTHER FLAGELLIN-SENSING-LIKE PROTEIN 319 627 - -
Gso17g0739 971 PANTHER FLAGELLIN-SENSING-LIKE PROTEIN 463 726 - -
Gso17g0739 971 PANTHER FLAGELLIN-SENSING-LIKE PROTEIN 85 386 - -
Gso17g0739 971 SUPERFAMILY L domain-like 584 857 - -
Gso17g0739 971 SMART LRR_typ_2 679 703 IPR003591 -
Gso17g0739 971 SMART LRR_typ_2 247 270 IPR003591 -
Gso17g0739 971 SMART LRR_typ_2 824 847 IPR003591 -
Gso17g0739 971 SMART LRR_typ_2 319 343 IPR003591 -
Gso17g0739 971 SMART LRR_typ_2 103 127 IPR003591 -
Gso17g0739 971 SMART LRR_typ_2 488 512 IPR003591 -
Gso17g0739 971 SMART LRR_typ_2 392 416 IPR003591 -
Gso17g0739 971 SMART LRR_typ_2 727 750 IPR003591 -
Gso17g0739 971 SMART LRR_typ_2 800 823 IPR003591 -
Gso17g0739 971 SMART LRR_typ_2 631 655 IPR003591 -
Gso17g0739 971 SMART LRR_typ_2 271 295 IPR003591 -
Gso17g0739 971 SMART LRR_typ_2 440 463 IPR003591 -
Gso17g0739 971 SMART LRR_typ_2 199 223 IPR003591 -
Gso17g0739 971 SMART LRR_typ_2 151 175 IPR003591 -
Gso17g0739 971 SUPERFAMILY RNI-like 85 406 - -
Gso17g0739 971 Gene3D Ribonuclease Inhibitor 535 874 IPR032675 -
Gso17g0739 971 PRINTS Leucine-rich repeat signature 106 119 - -
Gso17g0739 971 PRINTS Leucine-rich repeat signature 631 644 - -
Gso17g0739 971 ProSiteProfiles Leucine-rich repeat profile. 105 127 IPR001611 GO:0005515
Gso17g0739 971 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 173 506 - -
Gso17g0739 971 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 85 386 - -
Gso17g0739 971 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 319 627 - -
Gso17g0739 971 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 463 726 - -
Gso17g0739 971 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 585 911 - -
Gso17g0739 971 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 67 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0739 Gso-Chr17 6816357 6819590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0739 53 888 Receptor kinase-like Gene Family AT5G46330 35.392 3.56e-127 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0739 - - gmx:100779315 1864.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0329 5 3412325 3415668 Gso17g0739 17 6816357 6819590 GST
Gso17g0739 17 6816357 6819590 Gso4g1560 4 45106008 45109225 PCT
Gso4g1560 4 45106008 45109225 Gso17g0739 17 6816357 6819590 PCT