Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0161 ATGAGGTGGGAAAAGGTTGAGGTGAAGGCGATAGGCACAACAACAAAGGGTGGTGGAGGGCCAGGGAAGAGGTGGGGTCACACCTGCAACGCCGTCAAAAGTGGCAGACTTGTCTATGTATTTGGTGGTTACGGCAAAGATAACTGTCAGACCAACCAAGTTCATGTCTTCGACACTGTGAAGCAGGCATGGAGCCAACCCGCTTTAAAAGGCTCCCCACCTACACCTAGGGACAGCCATACATGCACAGCCGTTGGTGATAATCTGTTTGTGTTTGGGGGTACAGATGGAATGAACCCTCTCAAGGATTTGCACATATTAGACACTTCTTTGCAAACATGGGTTTCTCCAACCATAAGAGGAGAAGGACCACCAGCACGTGAGGGTCATAGTGCAGCAGTTGTTGGCAAACGACTATACATCTTTGGAGGTTGTGGAAAATCTGCAGATAATAATAATGAGCTCTACTACAATGATCTTTACATATTAAATACAGAGACATTTGTTTGGAAGTGTGCTACAACGTCAGGCACTCCACCATCTCCTCGTGATAGCCACAGTTGTTCATCTTGGAAAAACAAAATTATTGTGATAGGGGGTGAAGATGGGCATGATTATTATTTGTCTGACATCCACATTCTTGATACTGATACTCTAATTTGGAGGGAGCTGAGTACATCTGGCCAATTGTTGCCACCTCGAGCTGGTCATTCCACTGTTTCTTTTGGCAAGAACTTGTTTGTTTTTGGTGGATTTACAGATGCCCAAAATCTTTATAATGACCTTTATATGCTCGATATTGATACTGGTGTTTGGACAAATGTTACAACTGCAACAAATGGTCCTTCTGCTAGATTTTCTGTGGCTGGTGACTGTTTAGACCCTTTTAGGAGTGGTGTTCTTATATTCATCGGTGGTTGTAATAAAAGTCTTGAGGCCCTGGATGATATGTATTACCTATATACAGGGATTGCACGGGAAAGTGAACAGAGACCAGAAAAATTATCTTTAAAGAAGCAATTGAAACTGAAATGCCTAGAACAAAATCCCAATCCTAGCCAAAATCAAGTTCTCGTTAGATATGGAGTGGGTTCTGATGTGGGACAGATCATGACAGTGTTGAATTATAGCCAATCAAGTAGAGTAAATATCCCAGTAAACCAATCCCCACCTCCCGGAAAAAAAATGTTTGAAGCCAAGGTTACTGAAAATATCTCAGAAGGATATACTATTGAAACTGTTATTGATGGAAAACCTCTTCGTGGAATTCTGTTTTTAAACAAGCCTAACTCTCTGTACTCAGGTGCTCATACTTGCAGTAGGAAAAGGACTGTCGGTGAAATTGATAGTGTTGTCTCAAATGGTATACATTCTAACCAATTAAAGACTCCTAAAGTGGTCAAGCAAAATCAAATGGAAAACCGAGAAGCATCTCGTGGAGACTGTTCCGAATGTCATGAACACCGCACCGAATCCATTGCTGTGCTTATGTCAAGTAACCCAATGACTGCCAATCCTTCTGATACCCATAAGGTTTCTGCCAACCCAGAACCAGAAGCTGCGGCTTTGAATCGAAATGATGAAAAACATGAAACACCTAAATCTTTAATTGGAAACTTGACAAATGATGGAGCAAATGATGTGACAAGTTCCCAAGGTGAGGTGCAAACAAGTGATCAAACAAATGTGCTAATTTCCAACTTTGAAGTTCCAAGAGACAATAAAACAAGTGATGCTCCAAACTACAACACTGAATTTCTGAAACCTGCTGCAGCTGAGAGCGCTTTGCATCTGTCAAATCAAGTTTCAGTGGCGGATTCCGCAACTCCACAACTCCACAACTCCACAACTCCAACGACAAGAGAATGCAGTGAATCAGCAAAATTAATTTGA 1893 0.4184 MRWEKVEVKAIGTTTKGGGGPGKRWGHTCNAVKSGRLVYVFGGYGKDNCQTNQVHVFDTVKQAWSQPALKGSPPTPRDSHTCTAVGDNLFVFGGTDGMNPLKDLHILDTSLQTWVSPTIRGEGPPAREGHSAAVVGKRLYIFGGCGKSADNNNELYYNDLYILNTETFVWKCATTSGTPPSPRDSHSCSSWKNKIIVIGGEDGHDYYLSDIHILDTDTLIWRELSTSGQLLPPRAGHSTVSFGKNLFVFGGFTDAQNLYNDLYMLDIDTGVWTNVTTATNGPSARFSVAGDCLDPFRSGVLIFIGGCNKSLEALDDMYYLYTGIARESEQRPEKLSLKKQLKLKCLEQNPNPSQNQVLVRYGVGSDVGQIMTVLNYSQSSRVNIPVNQSPPPGKKMFEAKVTENISEGYTIETVIDGKPLRGILFLNKPNSLYSGAHTCSRKRTVGEIDSVVSNGIHSNQLKTPKVVKQNQMENREASRGDCSECHEHRTESIAVLMSSNPMTANPSDTHKVSANPEPEAAALNRNDEKHETPKSLIGNLTNDGANDVTSSQGEVQTSDQTNVLISNFEVPRDNKTSDAPNYNTEFLKPAAAESALHLSNQVSVADSATPQLHNSTTPTTRECSESAKLI* 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0161 630 Pfam Galactose oxidase, central domain 36 84 - -
Gso5g0161 630 MobiDBLite consensus disorder prediction 609 624 - -
Gso5g0161 630 SUPERFAMILY Galactose oxidase, central domain 206 314 IPR011043 -
Gso5g0161 630 MobiDBLite consensus disorder prediction 535 559 - -
Gso5g0161 630 PANTHER KELCH REPEAT DOMAIN 1 444 - -
Gso5g0161 630 SMART kelc_smart 245 291 IPR006652 GO:0005515
Gso5g0161 630 SMART kelc_smart 194 244 IPR006652 GO:0005515
Gso5g0161 630 SMART kelc_smart 37 87 IPR006652 GO:0005515
Gso5g0161 630 SMART kelc_smart 88 137 IPR006652 GO:0005515
Gso5g0161 630 MobiDBLite consensus disorder prediction 609 630 - -
Gso5g0161 630 Pfam Galactose oxidase, central domain 182 227 - -
Gso5g0161 630 Pfam Galactose oxidase, central domain 233 282 - -
Gso5g0161 630 Pfam Kelch motif 124 168 - -
Gso5g0161 630 MobiDBLite consensus disorder prediction 522 559 - -
Gso5g0161 630 Gene3D - 176 328 IPR015915 GO:0005515
Gso5g0161 630 SUPERFAMILY Galactose oxidase, central domain 13 225 IPR011043 -
Gso5g0161 630 PANTHER GALACTOSE OXIDASE/KELCH REPEAT SUPERFAMILY PROTEIN 1 444 - -
Gso5g0161 630 Gene3D - 2 175 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0161 Gso-Chr5 1746310 1754495 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0161 51 310 Acyl Lipid Metabolism Gene Families AT3G05420 28.364 3.71e-26 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0161 - - gmx:100820222 1265.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0161 5 1746310 1754495 Gso17g0677 17 6220043 6227575 GST
Gso5g0161 5 1746310 1754495 Gso4g1348 4 39134743 39141527 PCT
Gso4g1348 4 39134743 39141527 Gso5g0161 5 1746310 1754495 PCT