Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1348 ATGAGGTGGGAAAAGGTGAAGGGAATAGGAGGAGAAGAAGGGCCAGGGAAGAGGTGGGGCCACACGTGTAACGCGGTTAGAGATGGCAGATTCCTTTATCTCTTCGGCGGTTACGGCAAATTTAACTGTCAGACCAACCAAGTTCATGTCTTCGACACTCTGAAGCAGAGTTGGAGTGAACCAGCAATTAAGGGCCCCCCACCTACTCCTAGGGACAGCCATAGTTGCACTGTAATTGGTGATAGTCTGTTTGTGTTTGGGGGTACAGATGGGTCCAAGCTACTGAATGATTTGCACATACTAGATACTTCTTCACATACATGGGTTTTTCCAACTGTGAGAGGGGAAGCACCAGATGCACGTGAGGGTCATGATGCAGCACTTGTTGGCAAACGACTATTTATGTTTGGTGGTTGTGGGAGATCTGCTGATAACATTAATGAGGTGTACTACAATGACCTTTACATATTGAATACAGAATTGTTCGTTTGGAACCGTGCTACAACATCAGGCACTCCACCATCTCCTCGTGATGGCCATACTTGCTCATCTTGGAGAAACAAAATTATTGTGATAGGTGGGGAAGATGAAAATGATTCTTATCTGTCTGATGTCCACATCCTAGATACTGATACTCTAATCTGGAGTAAACTGTGTACGTCAGGCCAATTGTTGCCACCTCGAGCTGGTCATTCTACGGTTTCTTTTGGAAAGAACTTGTTTGTTTTTGGGGGCTTTACAGATGCTCAAAGCCTATACAACGACCTGTATATGCTCAACATTGAGACTTGTGTGTGGACGAAGGTGGCAATTACACCTAATGGTCCTTCTGCTAGATTTTCTGTTGCTGGTGACTGTTTAGACCCATATATGAGTGGTGTTCTTGTGTTTGTTGGTGGTTGTAATAGAAATCTGGAAGCCCTGGATGATATGCATTACCTATACACAGGGATTGCACGGGAAAGTGAACAGCGACCAAAGAAGTTATCCTTAAGGAAGCAATTGAAGCTGAAATGTCTAGAACAGAATCCCAATCTTGTCCAAAACCCAGTTCTGTGTGGATATGGAGTGGGTGCTGACAGTAACCAGCCCATGTCAATCTTGAACTATAGCCAACCAAGTAGACTATATATCCCAGTAAATCAACCCCTGCCTCCTGGAAAGAAAATGTTTCAAGCCAACGTTAAGGGAAAAAACTCAGCAGGATATACTATTGAAACCGTTATTGATGGAAAGCCTCTTCATGGAGTTCTGTTTAAAAACCAGCCAAACACTCTTATTCCAGTTCCTAATACTTCCAGTAGGAAAAGGACTTTTAGTGAAATTTTAAGTCCTGCTTCAAATGGTATACATTCACACAATGTAATGGCTTATAAGGTGCTCAGGCAGGACGGAATGCAAGATAAACAGGAATTACGGGGAGAGAGTTCAGAATCTCATGAACGCCATAAGGAAGCTGATACTATTGTTGTATCAAGTAACCCGACAACTGCTGCCAAGTCCATTAAGGTTTCTGTCAACCCAGAACCAGAAGCTGTTTCTATGGATCAAAATGGTGATGAAAAAAATGACACACCAAAATCCTTAATTGAGAGCTTGAAAAATGATGGATCCAATGATGTGACCAGTTCCAAAGGTGAAGTTCAAATTGGTGGTCAAATACATGTGCCAGTTTCCAACTATGAAATTCCAAGACAAATGAGTGATGCACCAAACTGTAATGCTGATGTCCTGAAACCTGCAGCAGCTAAGAGTGCTGTGTGTCCACCAAATCAAGGTGTAACAGGGGATTGCACAACTCCAAGGACAGAAGGACACAATGAACAAGCAAAATTAACTTGA 1842 0.4283 MRWEKVKGIGGEEGPGKRWGHTCNAVRDGRFLYLFGGYGKFNCQTNQVHVFDTLKQSWSEPAIKGPPPTPRDSHSCTVIGDSLFVFGGTDGSKLLNDLHILDTSSHTWVFPTVRGEAPDAREGHDAALVGKRLFMFGGCGRSADNINEVYYNDLYILNTELFVWNRATTSGTPPSPRDGHTCSSWRNKIIVIGGEDENDSYLSDVHILDTDTLIWSKLCTSGQLLPPRAGHSTVSFGKNLFVFGGFTDAQSLYNDLYMLNIETCVWTKVAITPNGPSARFSVAGDCLDPYMSGVLVFVGGCNRNLEALDDMHYLYTGIARESEQRPKKLSLRKQLKLKCLEQNPNLVQNPVLCGYGVGADSNQPMSILNYSQPSRLYIPVNQPLPPGKKMFQANVKGKNSAGYTIETVIDGKPLHGVLFKNQPNTLIPVPNTSSRKRTFSEILSPASNGIHSHNVMAYKVLRQDGMQDKQELRGESSESHERHKEADTIVVSSNPTTAAKSIKVSVNPEPEAVSMDQNGDEKNDTPKSLIESLKNDGSNDVTSSKGEVQIGGQIHVPVSNYEIPRQMSDAPNCNADVLKPAAAKSAVCPPNQGVTGDCTTPRTEGHNEQAKLT* 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1348 613 MobiDBLite consensus disorder prediction 467 545 - -
Gso4g1348 613 MobiDBLite consensus disorder prediction 584 613 - -
Gso4g1348 613 MobiDBLite consensus disorder prediction 515 529 - -
Gso4g1348 613 SUPERFAMILY Galactose oxidase, central domain 14 303 IPR011043 -
Gso4g1348 613 PANTHER KELCH REPEAT DOMAIN 12 470 - -
Gso4g1348 613 PANTHER GALACTOSE OXIDASE/KELCH REPEAT SUPERFAMILY PROTEIN 12 470 - -
Gso4g1348 613 Pfam Galactose oxidase, central domain 70 112 - -
Gso4g1348 613 Pfam Galactose oxidase, central domain 18 68 - -
Gso4g1348 613 Pfam Galactose oxidase, central domain 176 222 - -
Gso4g1348 613 Pfam Galactose oxidase, central domain 227 276 - -
Gso4g1348 613 MobiDBLite consensus disorder prediction 489 503 - -
Gso4g1348 613 Gene3D - 1 142 IPR015915 GO:0005515
Gso4g1348 613 MobiDBLite consensus disorder prediction 530 545 - -
Gso4g1348 613 Gene3D - 143 363 IPR015915 GO:0005515
Gso4g1348 613 MobiDBLite consensus disorder prediction 592 607 - -
Gso4g1348 613 MobiDBLite consensus disorder prediction 467 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1348 Gso-Chr4 39134743 39141527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1348 108 314 Acyl Lipid Metabolism Gene Families AT3G05420 31.797 4.31e-27 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1348 - - gmx:100785267 1259.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0161 5 1746310 1754495 Gso4g1348 4 39134743 39141527 PCT
Gso17g0677 17 6220043 6227575 Gso4g1348 4 39134743 39141527 PCT
Gso4g1348 4 39134743 39141527 Gso5g0161 5 1746310 1754495 PCT
Gso4g1348 4 39134743 39141527 Gso17g0677 17 6220043 6227575 PCT