Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0677 ATGAGGTGGGAAAAGGTTGAGGTGAAGGCGATAGGCACAACAACAGAGGGTGGTGGCGGTGGAGGGCCAGGGAAGAGGTGGGGTCACACCTGCAACGCCGTCAAAGGTGGCAGACTTGTCTATGTCTTCGGTGGTTACGGCAAAGATAACTGCCAGACCAACCAAGTTCATGTCTTCGACACTGTGAAACAGACATGGAGCCAACCTGCTTTAAAAGGCTCCCCACCAACTCCTAGGGACAGCCATACAAGCACAGCCGTTGGTGATAATTTGTTTGTGTTTGGGGGTACAGATGGAATGAACCCTCTCAAGGATTTGCACATATTAGACACTTCTTTGCAAACATGGGTTTCTCCAACCATAAGAGGAGAAGGGCCACCAGCACGTGAGGGTCATAGTGCAGCAGTTGTTGGCAAACGGCTATTCATCTTTGGAGGTTGTGGAAAATCTGCAGATAATAATAATGAGCTCTACTACAATGATCTTTACATATTAAATGCAGAGACATTTGTTTGGAAGTGTGCTACAACATCAGGCACTCCACCATCTCCTCGTGATAGCCACAGTTGTTCATCTTGGAGAAACAAAATTATTGTGATAGGAGGTGAAGATGGGCATGATTATTATTTGTCTGACGTCCATATTCTTGATACTGATACTCTAATTTGGAGGGAGCTGAGTACATCAGGCCAATTGTTGCCACCTCGAGCTGGTCATTCCACTGTTTCTTTTGGCAAGAACTTGTTTGTTTTTGGTGGATTTACAGATGCCCAAAACCTCTATAATGACCTTTATATGCTCGATATTGATACTGGTGTTTGGACAAATGTTACAACTGCAACCAATGGTCCTTCTGCTAGATTTTCTGTGGCTGGTGACTGTTTAGACCCTTTTAGGAGTGGTGTTCTTATATTCATCGGTGGTTGTAATAAAAGTCTTGAGGCCCTGGATGATATGTATTACCTATATACAGGGATTGCTCGAGAAAGTGAACAGAGACCAGAAAAATTATCTTTAAAGAAGCAATTGAAACTGAAATGTCTAGAACAAAATCCCAATCCTAGCCAAAATCAAGTTCTAGTTAGATATGGAGTGGGTTCTGATGTGGGACAGACCATGAAAGTGTTGAATTATAGCCAACAAAGTAGACTAAATATCCCAGTAAACCAATCCCTACCTCCTGGTAAGAAAATGTTTGAAGCCAAGGTTACTGAAAACATCTCAGAAGGATATACTATTGAAACTGTTATTGATGGAAAACCTCTTCGTGGAATTCTGTTTTTAAACAAGCCTATCTCTCTGTACACAGATGCTCATACTTGCAGTAGGAAAAGGACTGTTGGTGAAATTGATAGTGTTGTCTCGAATGGTATACACCCTAACCAATTTAAGACTCCTAAAGTGGTCAAGCAAAATCAAATGGAAAACCGAGAAGCATCTCGTGGAGACAGTTCAGAATCTCATGAACACCGCACTGAATCCATTGCCGTGCTTATGTCAAGTAACCCAATGACTGCCAATCCTTCTGATACCCATAAGGTTTCTGCCAACCCAGAAGCAGAAGCTGCTGCTTTGAATCAAAATGATGAAAAACATGAAACACCCAAATCCTTAATTGGAAACTTGACAAATGATGGAGCGAATGATGTGACAAGTTCTAAAGGTGAGGTGCAAACTAATGATCAAACAAATATGCTAATTTCCAACTTTGAAGTTCCAAGACGCGATAAAACAAGTGATGCTCCAAACTACAACACTGAATTTCTGAAACCTGCTGCAGCTGAGAGTGCTTTGCATCTGTCAAATCAAGGTGCAGTGGTGGATTCCGCAACTCCACAACTCCAACGGCAAGAGAATGCAGTGAATCAGCAAAATTAA 1878 0.4212 MRWEKVEVKAIGTTTEGGGGGGPGKRWGHTCNAVKGGRLVYVFGGYGKDNCQTNQVHVFDTVKQTWSQPALKGSPPTPRDSHTSTAVGDNLFVFGGTDGMNPLKDLHILDTSLQTWVSPTIRGEGPPAREGHSAAVVGKRLFIFGGCGKSADNNNELYYNDLYILNAETFVWKCATTSGTPPSPRDSHSCSSWRNKIIVIGGEDGHDYYLSDVHILDTDTLIWRELSTSGQLLPPRAGHSTVSFGKNLFVFGGFTDAQNLYNDLYMLDIDTGVWTNVTTATNGPSARFSVAGDCLDPFRSGVLIFIGGCNKSLEALDDMYYLYTGIARESEQRPEKLSLKKQLKLKCLEQNPNPSQNQVLVRYGVGSDVGQTMKVLNYSQQSRLNIPVNQSLPPGKKMFEAKVTENISEGYTIETVIDGKPLRGILFLNKPISLYTDAHTCSRKRTVGEIDSVVSNGIHPNQFKTPKVVKQNQMENREASRGDSSESHEHRTESIAVLMSSNPMTANPSDTHKVSANPEAEAAALNQNDEKHETPKSLIGNLTNDGANDVTSSKGEVQTNDQTNMLISNFEVPRRDKTSDAPNYNTEFLKPAAAESALHLSNQGAVVDSATPQLQRQENAVNQQN* 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0677 625 MobiDBLite consensus disorder prediction 525 555 - -
Gso17g0677 625 Gene3D - 1 149 IPR015915 GO:0005515
Gso17g0677 625 Pfam Galactose oxidase, central domain 38 86 - -
Gso17g0677 625 MobiDBLite consensus disorder prediction 537 555 - -
Gso17g0677 625 Pfam Galactose oxidase, central domain 184 229 - -
Gso17g0677 625 Pfam Galactose oxidase, central domain 235 284 - -
Gso17g0677 625 Gene3D - 150 399 IPR015915 GO:0005515
Gso17g0677 625 SUPERFAMILY Galactose oxidase, central domain 180 316 IPR011043 -
Gso17g0677 625 MobiDBLite consensus disorder prediction 458 492 - -
Gso17g0677 625 Pfam Kelch motif 126 170 - -
Gso17g0677 625 SUPERFAMILY Galactose oxidase, central domain 20 227 IPR011043 -
Gso17g0677 625 MobiDBLite consensus disorder prediction 458 473 - -
Gso17g0677 625 SMART kelc_smart 247 293 IPR006652 GO:0005515
Gso17g0677 625 SMART kelc_smart 39 89 IPR006652 GO:0005515
Gso17g0677 625 SMART kelc_smart 196 246 IPR006652 GO:0005515
Gso17g0677 625 SMART kelc_smart 90 139 IPR006652 GO:0005515
Gso17g0677 625 PANTHER KELCH REPEAT DOMAIN 1 552 - -
Gso17g0677 625 PANTHER GALACTOSE OXIDASE/KELCH REPEAT SUPERFAMILY PROTEIN 1 552 - -
Gso17g0677 625 MobiDBLite consensus disorder prediction 474 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0677 Gso-Chr17 6220043 6227575 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0677 53 312 Acyl Lipid Metabolism Gene Families AT3G05420 28.364 3.16e-26 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0677 - - gmx:100803752 1238.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0161 5 1746310 1754495 Gso17g0677 17 6220043 6227575 GST
Gso17g0677 17 6220043 6227575 Gso4g1348 4 39134743 39141527 PCT
Gso4g1348 4 39134743 39141527 Gso17g0677 17 6220043 6227575 PCT