Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g2048 ATGTTATTTGCAAATATGTGTCTCCTAACAGCAACTGACTTGAAGCGTATTTTTGAGAAAGTGGACGTGAATGGCGACGGATTGGTGAGCCTTGAGGAACTGAATCGATTGCTTCAGATGACGGGCAATTCCCAATATAGCATAGAAGAGTTGGAATCACTTGTGGAAAAGAAAAGTCTTGGTTTCAGTGATTTCTTGTTCTTTTACAACTCAATATCGGAGCAGAACAAGGGAGAGAGCAAAGGAAGTGAGTTGGAGAGCGACCTGGCCAAGACCTTTGAGGTGTTTGACTTGGACGGAGATGGTTTCATCACAAGCCAAGACCTTGAGTCTGTCTTGAAGAGGCTTGGCTTCTGGGATCAAACACATGCCAAGGATTGCAGAACCATGATTCGTTTCTATGACACCAATTTCGATGGTCGCCTTGATTTTCAGGAATTCAAGACCATGATGTTGCTCACCAAAGCTTGA 471 0.4374 MLFANMCLLTATDLKRIFEKVDVNGDGLVSLEELNRLLQMTGNSQYSIEELESLVEKKSLGFSDFLFFYNSISEQNKGESKGSELESDLAKTFEVFDLDGDGFITSQDLESVLKRLGFWDQTHAKDCRTMIRFYDTNFDGRLDFQEFKTMMLLTKA* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g2048 156 Pfam EF-hand domain pair 87 151 IPR002048 GO:0005509
Gso4g2048 156 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 6 155 - -
Gso4g2048 156 SMART efh_1 88 116 IPR002048 GO:0005509
Gso4g2048 156 SMART efh_1 13 41 IPR002048 GO:0005509
Gso4g2048 156 SMART efh_1 126 154 IPR002048 GO:0005509
Gso4g2048 156 CDD EFh 88 151 IPR002048 GO:0005509
Gso4g2048 156 ProSiteProfiles EF-hand calcium-binding domain profile. 9 44 IPR002048 GO:0005509
Gso4g2048 156 Gene3D - 72 152 - -
Gso4g2048 156 ProSiteProfiles EF-hand calcium-binding domain profile. 84 119 IPR002048 GO:0005509
Gso4g2048 156 ProSitePatterns EF-hand calcium-binding domain. 97 109 IPR018247 -
Gso4g2048 156 SUPERFAMILY EF-hand 13 153 IPR011992 -
Gso4g2048 156 PANTHER CALCIUM-BINDING PROTEIN CML44-RELATED 6 155 - -
Gso4g2048 156 Gene3D - 10 71 - -
Gso4g2048 156 Pfam EF hand 13 40 IPR002048 GO:0005509
Gso4g2048 156 ProSitePatterns EF-hand calcium-binding domain. 22 34 IPR018247 -
Gso4g2048 156 ProSiteProfiles EF-hand calcium-binding domain profile. 122 156 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g2048 Gso-Chr4 50895624 50896360 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g2048 9 152 EF-hand Containing Proteins AT1G21550 43.243 3.49e-37 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g2048 K13448 - gmx:100527117 306.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g2048 4 50895624 50896360 Gso4g2048 4 50895624 50896360 ECH
Gso14g1231 14 29349988 29350880 Gso4g2048 4 50895624 50896360 PCT
Gso13g0191 13 10848390 10849254 Gso4g2048 4 50895624 50896360 PCT
Gso4g2048 4 50895624 50896360 Gso14g1231 14 29349988 29350880 PCT
Gso4g2048 4 50895624 50896360 Gso13g0191 13 10848390 10849254 PCT