Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g1231 ATGTGTCCACTAACACCGAGTGACTTGCTGCGGATTTTCGAGAAGGTGGACATGAATGGCGATGGGTTTTTGAGCCTTGAGGAGTTGAAGATGCTGCTAGAGAAGACAGGGTTCGGTTATAGCATTGAGGAATTGGAGTCTTTGGTGGGAAAGAAAAGCCTCGACTTCAGTGAGTTCTTGTTCTTTTATGAATCTAGGTTGAAGCAGAACAATAATGGGGAGAAGGAATTAGGGGCTAGTGGGGGGGATGATAGTGATGAGGTTGAGGAAGTGGAGAGGGACCTTGTCAAGGCTTTCAAGGTGTTTGATTTGGATGATGATGGGTTCATCACAAGCCAAGAGCTTGAGTGTGTGTTGAAGAGGCTTGGCATGTGGGATGATGAAAGGTGTGGCAAGGATTGTGCATCCATGATTTGCTCCTATGACACTAACTTTGATGGCAAGCTTGATTTTCAGGAGTTTAAGGGCATGATGCTTCTTACAACTTCATGA 492 0.4533 MCPLTPSDLLRIFEKVDMNGDGFLSLEELKMLLEKTGFGYSIEELESLVGKKSLDFSEFLFFYESRLKQNNNGEKELGASGGDDSDEVEEVERDLVKAFKVFDLDDDGFITSQELECVLKRLGMWDDERCGKDCASMICSYDTNFDGKLDFQEFKGMMLLTTS* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g1231 163 ProSiteProfiles EF-hand calcium-binding domain profile. 90 125 IPR002048 GO:0005509
Gso14g1231 163 ProSitePatterns EF-hand calcium-binding domain. 103 115 IPR018247 -
Gso14g1231 163 CDD EFh 94 158 IPR002048 GO:0005509
Gso14g1231 163 Pfam EF-hand domain pair 94 158 IPR002048 GO:0005509
Gso14g1231 163 ProSiteProfiles EF-hand calcium-binding domain profile. 129 163 IPR002048 GO:0005509
Gso14g1231 163 Pfam EF hand 12 32 IPR002048 GO:0005509
Gso14g1231 163 PANTHER CALCIUM-BINDING PROTEIN CML44-RELATED 2 163 - -
Gso14g1231 163 ProSitePatterns EF-hand calcium-binding domain. 17 29 IPR018247 -
Gso14g1231 163 Gene3D - 6 67 - -
Gso14g1231 163 Gene3D - 68 162 - -
Gso14g1231 163 ProSiteProfiles EF-hand calcium-binding domain profile. 4 39 IPR002048 GO:0005509
Gso14g1231 163 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 2 163 - -
Gso14g1231 163 SUPERFAMILY EF-hand 7 160 IPR011992 -
Gso14g1231 163 SMART efh_1 133 161 IPR002048 GO:0005509
Gso14g1231 163 SMART efh_1 8 36 IPR002048 GO:0005509
Gso14g1231 163 SMART efh_1 94 122 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g1231 Gso-Chr14 29349988 29350880 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g1231 4 159 EF-hand Containing Proteins AT1G21550 40.764 8.57e-32 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g1231 K13448 - gmx:100500561 310.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1231 14 29349988 29350880 Gso13g0191 13 10848390 10849254 GST
Gso14g1231 14 29349988 29350880 Gso4g2048 4 50895624 50896360 PCT
Gso4g2048 4 50895624 50896360 Gso14g1231 14 29349988 29350880 PCT