Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0191 ATGTGTCCCCTAACACCCAGTGACTTGAAGCGGATTTTCAACAAGGTGGACATGAATGGCGATGGGTTATTGAGCCTTGAGGAGCTGAAGATGCTGCTGGAGAAGACAGGGTTCAGTTACAGCATTGAGGAATTGGAGTCTCTAGTGGGAAAGAAGAGCCTTGACTTCAGTGAGTTCTTGTTCTTTTATGAATCTATGTTGAAGCAGAACAATAATGGGGAGGAAGAATTAGGAGCTAGTAATTATGGGGATGATAGTGATGAGGTTGAGGAAGTGGAGAGGGACCTTGTGAAGGCTTTTAAAGTGTTTGATTTGGATGGTGATGGATTCATCACAAGTCAAGAGCTCGAGTTTGTGCTGAAGAGGCTTGGCATGTGGGATGATGAAAGGTGTGGCAAGGATTGCAAATCCATGATTTGCTCCTATGACACTAACTTTGATGGCAAGCTTGATTTTCAGGAGTTTAAGGACATGATGCTGCTTACTACTTCTTGA 495 0.4364 MCPLTPSDLKRIFNKVDMNGDGLLSLEELKMLLEKTGFSYSIEELESLVGKKSLDFSEFLFFYESMLKQNNNGEEELGASNYGDDSDEVEEVERDLVKAFKVFDLDGDGFITSQELEFVLKRLGMWDDERCGKDCKSMICSYDTNFDGKLDFQEFKDMMLLTTS* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0191 164 ProSiteProfiles EF-hand calcium-binding domain profile. 130 164 IPR002048 GO:0005509
Gso13g0191 164 SMART efh_1 95 123 IPR002048 GO:0005509
Gso13g0191 164 SMART efh_1 134 162 IPR002048 GO:0005509
Gso13g0191 164 SMART efh_1 8 36 IPR002048 GO:0005509
Gso13g0191 164 CDD EFh 95 159 IPR002048 GO:0005509
Gso13g0191 164 ProSitePatterns EF-hand calcium-binding domain. 104 116 IPR018247 -
Gso13g0191 164 Gene3D - 67 159 - -
Gso13g0191 164 ProSitePatterns EF-hand calcium-binding domain. 17 29 IPR018247 -
Gso13g0191 164 SUPERFAMILY EF-hand 8 161 IPR011992 -
Gso13g0191 164 Pfam EF hand 8 35 IPR002048 GO:0005509
Gso13g0191 164 Pfam EF hand 96 123 IPR002048 GO:0005509
Gso13g0191 164 Gene3D - 6 66 - -
Gso13g0191 164 PANTHER CALCIUM-BINDING PROTEIN CML44-RELATED 2 164 - -
Gso13g0191 164 ProSiteProfiles EF-hand calcium-binding domain profile. 4 39 IPR002048 GO:0005509
Gso13g0191 164 Pfam EF hand 142 159 IPR002048 GO:0005509
Gso13g0191 164 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 2 164 - -
Gso13g0191 164 ProSiteProfiles EF-hand calcium-binding domain profile. 91 126 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0191 Gso-Chr13 10848390 10849254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0191 4 160 EF-hand Containing Proteins AT1G21550 40.881 4.85e-33 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0191 K13448 - gmx:100779760 317.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1231 14 29349988 29350880 Gso13g0191 13 10848390 10849254 GST
Gso13g0191 13 10848390 10849254 Gso4g2048 4 50895624 50896360 PCT
Gso4g2048 4 50895624 50896360 Gso13g0191 13 10848390 10849254 PCT