Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g2040 ATGGCTAACAACGCAGCTGCTTGTGCTGAGAGAGCAACTAGTGACATGCTCATTGGTCCTGACTGGGCAATCAACATAGAGTTGTGTGATATCATTAATATGGACCCTGGGCAAGCAAAGGATGCTTTGAAGATACTCAAGAAGCGTTTGGCCAGTAAAAATCCAAAAATACAGCTTCTGGCTCTTTTTGTATTGGAGACTCTTAGTAAGAATTGTGGTGAAAGTGTATTTCAGCAGATCATTGAGCGGGATATCTTACATGAAATGGTTAAGATAGTGAAGAAGAAGCCGGATTTAAATGTGAGGGAAAAGATACTGATTTTAATTGATACATGGCAAGAAGCTTTTGGGGGGCCAACTGGAGTTTATCCTCAATACTATGCAGCATATAATGAATTGAAGTCTGCTGGAGTTGAATTTCCACCACGAGATGAGAATAGTGTACCATTCTTCACTCCCGCTCAAACTCAGCCAATTATTCATTCTGCTGCAGAATATGATGATGCTACTATTCAGGCTTCTCTTCAGTCAGATGCATCTGACCTTAGTTTGCTAGAGATTCAAAATGCTCAAGGACTAGCTGATGTATTGATGGAAATGCTTAGCGCCTTGAGTCCTAAAGACCGTGAGGGTGTGAAGGAGGAAGTGATTGTTGATCTTGTTGACCAGTGCCGTTCATACCAAAAGCGTGTCATGCTTCTTGTGAACAATACTACGGATGAGCAACTTTTAGGTCAGGGATTGGCACTGAATGACAGCCTTCAGCGAGTACTCTGTCGACATGATGACATTGTGAAAGGAACTGCTGATTCTGGTGCCAGAGAAGCAGAAACTTCAGTTCTACCACTTGTAAATGTAAACCACGAAGATGATGAATCAGAGGATGATTTTGCTCAACTAGCCCATAGGTCATCACGTGATACTCAGGCACAGAATCAAAAACCAGCCTATGACAAGGCAGAACCAGGGAGGATAAACCCACTCATTCCACCACCACCAGCATCAAAGAAGCCGGTCTACTCTGGCACCGGCATGGTTGACTATCTCAGTGGTGATACATACAAGACAGAAGGATCTCCTGAAAACTCAGAACCCACTTCATTTACAGCTCCCCTTCATTCTAGCCCTAATCCAACCTCGTCAACTATTCCATCTCTGTCTTCATCTCATCCTCATGCTGTGAGTACTACCTCATCACCAATTTTTAGCAGCGAGCCTGTGTATGATGAACAACCATCTTCTGAGGACAAATCTTCGGAGTGTCTGCCTGCAGCTCCCTGGGATGCTCAATCTCCTGGCATCATTCCGCCCCCACCTTCAAAGTATAATCAAAGACAACAGTTTTTTGAGCAACAAGGTGTATCTCATTCAAGTAGTGGATCCAGTTCCTCTTACGACAGCTTGGTGGGACAAACTCAAAATCTCTCCCTGAATTCATCCACCCCAACCAAACAACAGAAGCCAGAAGATGCCCTTTTCAAGGATCTTGTTGATTTTGCCAAATCCAAAACCTCATCATCTTCCAAACCCAATAGGTCATATTGA 1545 0.4362 MANNAAACAERATSDMLIGPDWAINIELCDIINMDPGQAKDALKILKKRLASKNPKIQLLALFVLETLSKNCGESVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQEAFGGPTGVYPQYYAAYNELKSAGVEFPPRDENSVPFFTPAQTQPIIHSAAEYDDATIQASLQSDASDLSLLEIQNAQGLADVLMEMLSALSPKDREGVKEEVIVDLVDQCRSYQKRVMLLVNNTTDEQLLGQGLALNDSLQRVLCRHDDIVKGTADSGAREAETSVLPLVNVNHEDDESEDDFAQLAHRSSRDTQAQNQKPAYDKAEPGRINPLIPPPPASKKPVYSGTGMVDYLSGDTYKTEGSPENSEPTSFTAPLHSSPNPTSSTIPSLSSSHPHAVSTTSSPIFSSEPVYDEQPSSEDKSSECLPAAPWDAQSPGIIPPPPSKYNQRQQFFEQQGVSHSSSGSSSSYDSLVGQTQNLSLNSSTPTKQQKPEDALFKDLVDFAKSKTSSSSKPNRSY* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g2040 514 SUPERFAMILY GAT-like domain 141 267 - -
Gso4g2040 514 PANTHER TOM1-LIKE PROTEIN 1 513 IPR044836 GO:0035091|GO:0043130|GO:0043328
Gso4g2040 514 MobiDBLite consensus disorder prediction 355 409 - -
Gso4g2040 514 MobiDBLite consensus disorder prediction 440 487 - -
Gso4g2040 514 PIRSF TOM1 1 513 IPR014645 -
Gso4g2040 514 Pfam VHS domain 9 134 IPR002014 GO:0035091|GO:0043130
Gso4g2040 514 SMART VHS_2 5 137 IPR002014 GO:0035091|GO:0043130
Gso4g2040 514 CDD VHS 10 135 - -
Gso4g2040 514 ProSiteProfiles VHS domain profile. 12 141 IPR002014 GO:0035091|GO:0043130
Gso4g2040 514 SUPERFAMILY ENTH/VHS domain 4 142 IPR008942 -
Gso4g2040 514 Gene3D - 2 158 IPR008942 -
Gso4g2040 514 Gene3D - 175 273 IPR038425 -
Gso4g2040 514 ProSiteProfiles GAT domain profile. 178 266 IPR004152 GO:0035091|GO:0043130
Gso4g2040 514 CDD GAT_GGA_like_plant 186 264 - -
Gso4g2040 514 PANTHER TOM1-LIKE PROTEIN 4 1 513 - -
Gso4g2040 514 MobiDBLite consensus disorder prediction 287 492 - -
Gso4g2040 514 Pfam GAT domain 193 267 IPR004152 GO:0035091|GO:0043130
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g2040 Gso-Chr4 50778486 50793999 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g2040 - - gmx:100792343 941.414
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g2040 4 50778486 50793999 Gso4g2040 4 50778486 50793999 ECH
Gso4g2040 4 50778486 50793999 Gso6g1011 6 9814857 9822253 GST
Gso13g0201 13 11160725 11168839 Gso4g2040 4 50778486 50793999 PCT
Gso4g2040 4 50778486 50793999 Gso13g0201 13 11160725 11168839 PCT