Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1662 ATGTGCACGCCTGCTATTGGCTCAATCCCAGTAGCGTTTAAATTCTCTTTCTCTTTCTCTATCTTTCACTCTTTTTCTTCATCTCTTCTCTCTTCCCTCTCTAGGGTTGCCTTCCTTCTCTCTCCTTTCCTCCTCCTTCCCGTTCGCCGGCCGGAATCCTATTTTCCGGCCATATTTCCGGCTGCCTGTAATTCCCCTTCACCTTCCGAACTCAATCAATCTTTTCAATTCGAAGCTGTTGCTATCTTTTGCAGCGATATTGGAGCAGAGAGAGGGAAGATGGCAAGTCAAAGCGGTGCCTCTAGAAGGAGTATTTCGTCGTCGACGAGGAGAGCCTCTGAATCAGGGGCGCCTCGAAAATCAATTTCCTCTTCGCGACCTTTGGCATTGGCCGGAGAGCGGACTGTGAAATCATTGCGACTTACAAAGGCCCTGACAGTACCTGAAACAACAACTGTCTATGAAGCTTGCCGTCGGATGGCTGCCCGTAGAGTTGATGCTCTATTGCTAACTGATTCTAATGCTTTGCTCTGTGGAATCCTCACAGACAAGGATATAGCAGCAAGAGTTATTGCCAAAGAGATTAATCTTGAAGAGACACCAGTTTCCAAAGTCATGACTAGGAATCCGGTATTTGTTCTTTCTGAAACTCTTGCTGCAGAAGCCCTCCAAAAGATGGTGCAAGGGAAATTCAGACATTTACCTGTGGTGGAGAATGGAGAAGTTTTGGCTTTACTAGACATAGCAAAGTGTTTGCATGATGCCATTGCCCGTATGGAAAGGGCAGCTGAGAAAGGAAAAGCAATTGCAGCAGCTGTTGAAGGAGTTGAAAAACACTGGGGAACATCAGACTCCAATACATCATTCATTGAGACTCTGCGGGAGCAAATATTCAAGCCATCATTGTCCACAATCATTCCCGAGAATTCAAAACTTGTAACAGTATCACCAACAGATTCAGTTCTGACAACAACAAAGAAGATGGTTGAATTTCGTGCAAGTTGTGCAGTTGTGACAGTTAATGACAAACCTCGTGGCATCTTTACTTCAAAAGATATTTTGTTGCGGGTAATTGCACAAAATCTTTCTCCAGAATCAACCCCCGTTGAGAAGGTCATGACTCCAAATCCAGAATGTGTCATAATTGATACACCCATTGTTGATGCACTTCACACTATGCATGATGGGAAATTTTTGCATCTTCCTGTGGTTGATAGAGATGGCAGTGTAGTTGCTGTGGTTGATGTGATTCATGTCACTCATGCTGCAGTGGCGACAGTAAGTCAGGTTGGGAATAATGAAGCTGCCACCACCTTGATGCAAAGATTTTGGGATTCAGCCATGGCCTTAACCCCAAATGATGATGACGATGATACTCGAAGTGAGGGTTCGTTGAAAGTGGCTTCTGAGGGAGGAGAAACAGGGAGATCCATTCCTTATCTTTCATCAAGCATTGCCAATACATTTTCCTTCAAAATACAAGATAAGAAGGGCAGAATGCACAGATTCACATGTGATACCCGGAGCATGATGGAGGTTATAACTTCAATCCTTCAGAGACTTGGTGATGATATCGATCCTAACAACATACCCCAAATTCTGTATGAAGACGAAGATCATGATAAAGTTGTATTGGCTTCAGACAGTGATCTTGCAGCAGCTGTGGATCATGCAAGGACAGCTGGTTTGAAGGGGTTGAAATTGCATTTGGACTACGCAGGACCACGTGATAATGTGAAAGGTTCTCGTTCAGGAAGTTATGCTTATTCAGATGCATGGGCTTCAGCATATAGTGCCGCCGCTGCTGGTGCTGCACTTGTTGCTGGCTTAGGCATATTAACGTACTTGAAGCGAGTTTGA 1860 0.4452 MCTPAIGSIPVAFKFSFSFSIFHSFSSSLLSSLSRVAFLLSPFLLLPVRRPESYFPAIFPAACNSPSPSELNQSFQFEAVAIFCSDIGAERGKMASQSGASRRSISSSTRRASESGAPRKSISSSRPLALAGERTVKSLRLTKALTVPETTTVYEACRRMAARRVDALLLTDSNALLCGILTDKDIAARVIAKEINLEETPVSKVMTRNPVFVLSETLAAEALQKMVQGKFRHLPVVENGEVLALLDIAKCLHDAIARMERAAEKGKAIAAAVEGVEKHWGTSDSNTSFIETLREQIFKPSLSTIIPENSKLVTVSPTDSVLTTTKKMVEFRASCAVVTVNDKPRGIFTSKDILLRVIAQNLSPESTPVEKVMTPNPECVIIDTPIVDALHTMHDGKFLHLPVVDRDGSVVAVVDVIHVTHAAVATVSQVGNNEAATTLMQRFWDSAMALTPNDDDDDTRSEGSLKVASEGGETGRSIPYLSSSIANTFSFKIQDKKGRMHRFTCDTRSMMEVITSILQRLGDDIDPNNIPQILYEDEDHDKVVLASDSDLAAAVDHARTAGLKGLKLHLDYAGPRDNVKGSRSGSYAYSDAWASAYSAAAAGAALVAGLGILTYLKRV* 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1662 619 SUPERFAMILY CBS-domain pair 311 423 IPR046342 -
Gso4g1662 619 ProSiteProfiles CBS domain profile. 305 365 IPR000644 -
Gso4g1662 619 PANTHER CBS/OCTICOSAPEPTIDE/PHOX/BEMP1 (PB1) DOMAIN PROTEIN 104 607 - -
Gso4g1662 619 Pfam CBS domain 309 355 IPR000644 -
Gso4g1662 619 Pfam CBS domain 369 419 IPR000644 -
Gso4g1662 619 Pfam CBS domain 202 246 IPR000644 -
Gso4g1662 619 Pfam CBS domain 141 188 IPR000644 -
Gso4g1662 619 MobiDBLite consensus disorder prediction 450 474 - -
Gso4g1662 619 SMART PB1_new 488 573 IPR000270 GO:0005515
Gso4g1662 619 SMART cbs_1 311 358 IPR000644 -
Gso4g1662 619 SMART cbs_1 209 253 IPR000644 -
Gso4g1662 619 SMART cbs_1 143 191 IPR000644 -
Gso4g1662 619 SMART cbs_1 376 424 IPR000644 -
Gso4g1662 619 CDD CBS_pair_MUG70_1 141 257 - -
Gso4g1662 619 ProSiteProfiles CBS domain profile. 373 434 IPR000644 -
Gso4g1662 619 ProSiteProfiles PB1 domain profile. 486 573 IPR000270 GO:0005515
Gso4g1662 619 SUPERFAMILY CBS-domain pair 133 250 IPR046342 -
Gso4g1662 619 Pfam PB1 domain 488 571 IPR000270 GO:0005515
Gso4g1662 619 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 104 607 - -
Gso4g1662 619 MobiDBLite consensus disorder prediction 97 122 - -
Gso4g1662 619 CDD PB1_MUG70 489 573 - -
Gso4g1662 619 Gene3D - 488 570 - -
Gso4g1662 619 MobiDBLite consensus disorder prediction 94 125 - -
Gso4g1662 619 Gene3D - 282 435 IPR046342 -
Gso4g1662 619 Gene3D - 119 271 IPR046342 -
Gso4g1662 619 ProSiteProfiles CBS domain profile. 140 199 IPR000644 -
Gso4g1662 619 ProSiteProfiles CBS domain profile. 206 264 IPR000644 -
Gso4g1662 619 SUPERFAMILY CAD & PB1 domains 482 573 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1662 Gso-Chr4 46452860 46459886 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1662 - - gmx:100785816 1037.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1662 4 46452860 46459886 Gso5g1738 5 40690823 40696312 PCT
Gso4g1662 4 46452860 46459886 Gso8g0098 8 944802 950279 PCT