Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1337 ATGCGGCGGCGGGCCGCCGAGTATCGGCGCCCGGTTCGGCGGCGGTTCTCTCATTGGATCTGGTTGCTTCTCGGCGCGTTCTCCCTTGCTGGTTTGGTTTTGTTCTTCGTGCAGCACAATCACCGCGAGGATCGGATCCAACAGCCCCTTCTGGAGAAAAATGCTATAGTTGAACATATTGCCAAGAGATATAATTTTACTGAGGAAATTTTAAGTGCAACATCCTTTTCACGGCAGTTAGCGGAGCAAATGGTTCTGGCCAAGGCTTATGTGATTATTGCCAAAGAGCACAATAATCTTCACCTTGCCTGGGAGCTTAGCTCAAAGATTAGAAGTTGTCAGCTTTTGCTTTCAAAAGCTGCCATGACTGGGGAGCGTCTGACCATGGAGGAAGCTGAGCCAATTATTAAAAGCTTGTCTTCTCTAATTTTCAAGGCACAAGATGTCCATTATGACATTGCAACCACTATAGCAACAATGAAATCACATATTCAAGCACTTGAAGAGCGTGCAAATACAGCAACAGTTCAAAGTACTGTGTTTGCTCAAATATCAGCTGAAGCACTACCCAAGAGTCTTCATTGCTTTAATGTGAAACTTATGGCTGATTGGCTGAAGATGCCATCCCTGCAAAAACGAGAACATGAGAGTAGAATCTCCCCCCGGCTCACAGATAACAATCTATATCATTTCTGCATTTTTTCAGATAATGTACTGGCTACATCTGTAGTTATTAACTCAACAGTCATGAATGCTGACCATCCAAAACAGTTAGTCTTTCACATTGTTACTGATGGTATCAATTATGGAGCAATGCAAGCATGGTTCTTCAGTAGTGACTTTAAAGGGGCTACCTTAGAGGTGCAGAATATTGAGGAATTTTATTGGTTGAATGAATCTTATTCTCCAATTGTCAAACAGCTACACATTCCAGAATCACGATCCTTTTATTTTGGACCTTATCAAGGTGCAAATGTTGAGCCAAAATTGCAAAACCCCAAGTTTTTGTCTTTACTAAATCATCTTCGGTTTTACATTCCTGAGATTTATCCACTACTTGAGAAGGTTGTTTTCCTAGATGATGATGTTGTTGTTCAGAAGGACCTAACCCCACTTTTCTCACTGGATTTGCATGGAAATGTGAATGGAGCTGTTGAAACTTGTCTAGAAGCCTTTCATAGGTACTACAAGTATCTCAACTTCTCAAATTCAATTATAAGCTCAAAGTTTGATCCACAAGCATGTGGATGGGCACTTGGTATGAATGTGTTTGACTTGTTTTCATGGAGGAAAGCAAATGTGACTGCAAGGTATCATTATTGGCAGGAGCAGAATGCTGATGAGACACTCTGGAAGCTCGGTACTCTTCCACCTGCTCTTTTAAGCTTTTATGGTTTGACAGAACCACTTGACAGAAGATGGCATGTTTTAGGATTGGGTTATGACCTAAACATTGACAACCGCCTCATTGAAAGTGCCGCAGTTATTCACTTTAATGGGAACATGAAACCATGGCTGAAGTTAGCTATAGGCAGGTACAAGCCATTATGGCACAAGTACATAAACCAAAGTCACCCCCATCTACAAGATTGTGCTGCAGGTTAA 1605 0.4181 MRRRAAEYRRPVRRRFSHWIWLLLGAFSLAGLVLFFVQHNHREDRIQQPLLEKNAIVEHIAKRYNFTEEILSATSFSRQLAEQMVLAKAYVIIAKEHNNLHLAWELSSKIRSCQLLLSKAAMTGERLTMEEAEPIIKSLSSLIFKAQDVHYDIATTIATMKSHIQALEERANTATVQSTVFAQISAEALPKSLHCFNVKLMADWLKMPSLQKREHESRISPRLTDNNLYHFCIFSDNVLATSVVINSTVMNADHPKQLVFHIVTDGINYGAMQAWFFSSDFKGATLEVQNIEEFYWLNESYSPIVKQLHIPESRSFYFGPYQGANVEPKLQNPKFLSLLNHLRFYIPEIYPLLEKVVFLDDDVVVQKDLTPLFSLDLHGNVNGAVETCLEAFHRYYKYLNFSNSIISSKFDPQACGWALGMNVFDLFSWRKANVTARYHYWQEQNADETLWKLGTLPPALLSFYGLTEPLDRRWHVLGLGYDLNIDNRLIESAAVIHFNGNMKPWLKLAIGRYKPLWHKYINQSHPHLQDCAAG* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1337 534 SUPERFAMILY Nucleotide-diphospho-sugar transferases 229 531 IPR029044 -
Gso4g1337 534 PANTHER HEXOSYLTRANSFERASE 3 533 - -
Gso4g1337 534 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 3 533 IPR029993 GO:0047262
Gso4g1337 534 CDD GT8_like_1 229 522 - -
Gso4g1337 534 Pfam Glycosyl transferase family 8 233 508 IPR002495 GO:0016757
Gso4g1337 534 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 231 531 IPR029044 -
Gso4g1337 534 Coils Coil 157 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1337 Gso-Chr4 38513616 38517946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1337 1 531 Glycosyltransferase AT2G20810 53.731 0.0 582
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1337 K13648 - gmx:100784212 1083.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0152 5 1626177 1629500 Gso4g1337 4 38513616 38517946 PCT
Gso17g0688 17 6344229 6347833 Gso4g1337 4 38513616 38517946 PCT
Gso4g1337 4 38513616 38517946 Gso5g0152 5 1626177 1629500 PCT
Gso4g1337 4 38513616 38517946 Gso17g0688 17 6344229 6347833 PCT