LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso3g2210	ATGGAAAGCAACCAATCGGCAAAAGAGATCACGGTGGAAGTAGAAGAGTTCGAGGACTTGCTGCCCGTGATGGCAGAGAAGTTGGATGTGGAGACCTTTGTGTCTGAGTTGTGTGGGGGTTTCAAGCTTCTGGCTGACCCAGAAACGGGTTTGATCACTGGTGAGAGTCTTATGAGGAACTCAGCTATGTTGGGTATGGATGGGATGAGCAAAGAGGAAGCAGAAACCATGGTTAGACAGGGAGATCTTGATGGGGATGGGAAGCTCAATGAAACTGAGTTTTGCATCCTTATGGTGAGGCTTAGCCCTGGGATCATGGAAGATGCTGAGACCTGGCTTCACAAGGCACTTGAACAAGAGCTCACCAAGTCCTCAACTTAA	381	0.4882	MESNQSAKEITVEVEEFEDLLPVMAEKLDVETFVSELCGGFKLLADPETGLITGESLMRNSAMLGMDGMSKEEAETMVRQGDLDGDGKLNETEFCILMVRLSPGIMEDAETWLHKALEQELTKSST*	127

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso3g2210	126	PANTHER	CALCIUM-BINDING PROTEIN KIC	4	123	IPR044205	GO:0005509
	Gso3g2210	126	SUPERFAMILY	EF-hand	17	107	IPR011992	-
	Gso3g2210	126	ProSiteProfiles	EF-hand calcium-binding domain profile.	69	104	IPR002048	GO:0005509
	Gso3g2210	126	Gene3D	-	14	126	-	-
	Gso3g2210	126	ProSitePatterns	EF-hand calcium-binding domain.	82	94	IPR018247	-
	Gso3g2210	126	PANTHER	CALCIUM-BINDING PROTEIN KIC	4	123	-	-
	Gso3g2210	126	Pfam	EF-hand domain pair	48	100	IPR002048	GO:0005509

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso3g2210	Gso-Chr3	47262476	47263331	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso3g2210	16	125	EF-hand Containing Proteins	AT2G46600	72.727	1.48e-55	168

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso3g2210	K24345		-	gmx:100787197	249.21

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso19g2170	19	50166081	50166770	Gso3g2210	3	47262476	47263331	GST
	Gso3g2210	3	47262476	47263331	Gso7g0475	7	4719955	4721215	PCT
	Gso3g2210	3	47262476	47263331	Gso16g0182	16	2086048	2087294	PCT
	Gso7g0475	7	4719955	4721215	Gso3g2210	3	47262476	47263331	PCT
	Gso16g0182	16	2086048	2087294	Gso3g2210	3	47262476	47263331	PCT