Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g2170 ATGGAAAGCAACCAATCGGCTAAAGAGATCACGGTGGAAGTAGAAGAGTTCGAGGACTTGCTGCCTGTGATGGCAAAGAAGTTGGATGTGGAGACCTTTGTGTCGGAGTTGTGTGGGGGTTTCAATCTCCTGGCTGACCCAGAAACAGGTTTGATCACTGGTGAGAGTCTCATGAGGAATTCAACTCTGTTGGGTATGGATGGGATGAGCAAAGAGGAAGCAGAGACCATGGTTAGACAGGGAGATCTTGATGGGGACGGGAAGCTCAATGAAACTGAGTTTTGCATCCTTATGGTGAGGCTTAGCCCTGGGATCATGGAAGATGCTGAGGCCTGGCTTCACAAGGCACTTGAACAAGAGCTCACCAAATCCTCAACTTAA 381 0.4882 MESNQSAKEITVEVEEFEDLLPVMAKKLDVETFVSELCGGFNLLADPETGLITGESLMRNSTLLGMDGMSKEEAETMVRQGDLDGDGKLNETEFCILMVRLSPGIMEDAEAWLHKALEQELTKSST* 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g2170 126 Gene3D - 14 126 - -
Gso19g2170 126 ProSiteProfiles EF-hand calcium-binding domain profile. 69 104 IPR002048 GO:0005509
Gso19g2170 126 PANTHER CALCIUM-BINDING PROTEIN KIC 4 123 - -
Gso19g2170 126 PANTHER CALCIUM-BINDING PROTEIN KIC 4 123 IPR044205 GO:0005509
Gso19g2170 126 ProSitePatterns EF-hand calcium-binding domain. 82 94 IPR018247 -
Gso19g2170 126 Pfam EF-hand domain pair 48 100 IPR002048 GO:0005509
Gso19g2170 126 SUPERFAMILY EF-hand 13 105 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g2170 Gso-Chr19 50166081 50166770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g2170 16 121 EF-hand Containing Proteins AT2G46600 73.585 2.98e-54 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g2170 K24345 - gmx:100798325 249.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g2170 19 50166081 50166770 Gso3g2210 3 47262476 47263331 GST
Gso19g2170 19 50166081 50166770 Gso7g0475 7 4719955 4721215 PCT
Gso19g2170 19 50166081 50166770 Gso16g0182 16 2086048 2087294 PCT
Gso7g0475 7 4719955 4721215 Gso19g2170 19 50166081 50166770 PCT
Gso16g0182 16 2086048 2087294 Gso19g2170 19 50166081 50166770 PCT