Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1962 ATGAGTTCTTCGCTACCTCAAGTTGCCAAGAACAAAGCAATGTGGCTGCATCCTAAGGTTTTGGGTTTTAATCCTCCTGAAAGATGGGGCCACTCTGCTTGCTTCTCCAACGGGCTTATGTATGTCTTTGGGGGTTGCTGTGGGGGACTGCATTTTTGCGATGTTCTCACATTGGACCTTAACAAAATGGTTTGGAGCAAGCTTACTACCACAGGTGAAAAGCCAGGGCCAAGAGATAGCCATAGTGCTGTTTTTGTGGGGCATAAAATGATAGTGTTTGGTGGCACAAATGGCTTCAAGAAGATGAATCACATTCATGTACTTGATCTCGTTACCAAAGAGTGGGTTCGACCTGAGTGTAAAGGGACTCCTCCTTCTCCACGTGAAAGCCATACTGCCACACTTGTTGGTGATGAAAGAATAGTGATATTTGGTGGTAGTGGAGAAGGTCATGCTAACTATTTAAACGATTTGCATATTCTTGATCTTCGAACCATGAGTTGGACTTCCCCTGAGTTGAAAGGTGATTTTCCTGTCCCTAGGGACAGTCATAGTACCCTTGCAATTGGGAACAAGCTTATTGTGTATGGTGGAGACTCCGGTGATCAGTATCATGGCAACGTTCATATGCTTGATATGACAACAATGACTTGGTCTAAATTGTCTATTCAAGGTTCTCCACCAGGAGTCAGGGCAGGTCATGCTGCAGTGAACATTGGAACAAAGGTCTATATCATTGGAGGAGTTGGAGATAAACGTTACTATAATGACGTTTGGATCTTTGATATCTGCAATTTTACATGGACTCAACTTGATATAGATTTTCACCAGCCACAAGGGCGATTTTCTCATACAGCTGTTGCTGCTGGCATGGATATTGCAATATATGGCGGGTGTGGTGAAGATGAACGTCCTCTCAATGAATTGTTAGTGTTGCAGCTTGGAGCAGAGCATCCAAATGGACGTTACTACATTCCCATGTGCAAACCTTTTGGAACTTATTGGAATCAAGAAAAGAAGATTATCCCAGGAGAAGCAGATACTCACTCGCAGAAAACTTTACTCGTGAGGAATAATGTGGAAACTTTTGGACAAGGAGCTTATGAGGTTGCATCAGAAAAATCGCCACCTTATCACTTTGATTCAGATACTTCACGACAGAAGAGGGGGAGAATTGCTGCTGCAAAGGTGTGGGATGTTAAATCAGAGCAAGAAGAAAACTTTCTTACATTGTCCCTTCATTCGTCTCCATGTCAATCCGATCAAGAACAGACACCAAGTCAAAAAGCAAATACATTATTTCCATCTACTTGCCAACACGACAATGGCTCAAATTATAAGAGAACTTTTAAAACTTCACAAGATCTTCATTTCCTACGACATCAACTAAAACAGGAACATTGCCTTAATGTTCATGAGGGTAGAAAAAGAGCTCAACTTCAGGGTGCAGAGCAGAAAACCATGGGGCAAGGATCCATTCAACACCTGATTGGTGCTGAAGTTGGGGGGAGAGTTGATGAACCCTTTGACTCAGTTTCCCTCTCTCCTGCAGCTGTGAATGGAAGGATTTTCAGGGGAGTCATATTTTCACCCGGAGCAGGAGTTGTCTCAAAAGTGGCCAATGTCAAACCAAATTGTTCTCTAACAAGTTCTTTTCCTTCTTCCTCTCAAGCATTTTTGAACTCTAATCATGTGGGTAATTCAAGGGCTTCCCAACAAGCACCTATTCGTTTGCGTGCAGAGCCATGTCATGGTTCACGGCAAACCCCAGTGGCATTACCATTTCCAATCATGCGAGGCACTTCAAATGTTGTTTCCAAAGAGCATAAAATCAATAGTGACCTTCAAGGGGGGTTGGTTTTAACACTTGGAGGACCTGCTAGTGCACATCCTCAGGTAAAGCATTGA 1908 0.4313 MSSSLPQVAKNKAMWLHPKVLGFNPPERWGHSACFSNGLMYVFGGCCGGLHFCDVLTLDLNKMVWSKLTTTGEKPGPRDSHSAVFVGHKMIVFGGTNGFKKMNHIHVLDLVTKEWVRPECKGTPPSPRESHTATLVGDERIVIFGGSGEGHANYLNDLHILDLRTMSWTSPELKGDFPVPRDSHSTLAIGNKLIVYGGDSGDQYHGNVHMLDMTTMTWSKLSIQGSPPGVRAGHAAVNIGTKVYIIGGVGDKRYYNDVWIFDICNFTWTQLDIDFHQPQGRFSHTAVAAGMDIAIYGGCGEDERPLNELLVLQLGAEHPNGRYYIPMCKPFGTYWNQEKKIIPGEADTHSQKTLLVRNNVETFGQGAYEVASEKSPPYHFDSDTSRQKRGRIAAAKVWDVKSEQEENFLTLSLHSSPCQSDQEQTPSQKANTLFPSTCQHDNGSNYKRTFKTSQDLHFLRHQLKQEHCLNVHEGRKRAQLQGAEQKTMGQGSIQHLIGAEVGGRVDEPFDSVSLSPAAVNGRIFRGVIFSPGAGVVSKVANVKPNCSLTSSFPSSSQAFLNSNHVGNSRASQQAPIRLRAEPCHGSRQTPVALPFPIMRGTSNVVSKEHKINSDLQGGLVLTLGGPASAHPQVKH* 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1962 635 Pfam Galactose oxidase, central domain 38 85 - -
Gso3g1962 635 SUPERFAMILY Kelch motif 71 315 IPR015915 GO:0005515
Gso3g1962 635 Gene3D - 13 120 IPR015915 GO:0005515
Gso3g1962 635 PANTHER KELCH REPEAT DOMAIN 1 629 - -
Gso3g1962 635 Gene3D - 121 363 IPR015915 GO:0005515
Gso3g1962 635 Pfam Kelch motif 128 181 - -
Gso3g1962 635 PANTHER OS01G0300900 PROTEIN 1 629 - -
Gso3g1962 635 Pfam Kelch motif 231 271 IPR006652 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1962 Gso-Chr3 45156001 45160437 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1962 15 488 Acyl Lipid Metabolism Gene Families AT3G05420 28.400 3.84e-41 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1962 K20285 - gmx:100814299 1313.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1923 19 47951787 47956236 Gso3g1962 3 45156001 45160437 GST
Gso3g1962 3 45156001 45160437 Gso10g1343 10 39764682 39769848 PCT
Gso10g1343 10 39764682 39769848 Gso3g1962 3 45156001 45160437 PCT