Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1923 ATGTTTTCACTACATCCATCGCTTGCTGTTGGTTGCCACAGTGATTTGGACTTGAAAGCGCCCATCTTTTCATGTCTATTGATATTGATTGTTGATGCATCACTTGGCTTGTTGATGTCCTCTTTGAATCAATCTCTCTTTCCATACGACTCTTCGTCCTTGACTGTTTCTTCATCTGTGTTCAACCCTTATGCTTTTTTAAGCAACCGTCATCACACTCTCACACTCACACTTCACACTTCACAACATAGAAGACAGATGAGTTCTTTGCTACCTCAAGTTGCCAAGAACAAAGCAATGTGGCTGAATCCCAAGGTTTTGGGTTTTAATCCTCCTGAAAGATGGGGCCACTCTGCTTGCTTCTCCAAGGGGCTTATGTATGTCTTTGGGGGTTGCTGTGGTGGACTGCATTTTTGCGATGTTCTGACTTTGGACCTTAACAAAATGGTTTGGAGCAAGCTTACTACCACAGGTGAAAAGCCGGGGCCTAGAGATAGCCATAGTGCTGTTCTTGTGGGGCATAAAATGATAGTGTTTGGTGGCACAAATGGCTTCAAGAAGGTTAATCACATTCATATACTTGATCTTGTTACCAAAGAGTGGGTTCGACCTGAGTGTAAAGGGAATCCTCCTTCTCCTCGTGAAAGCCATACTGCCACACTTGTTGGTGATGAAAGGATAGTGATATTTGGTGGAAGTGGAGAAGGTCATGCTAACTATTTAAACGATTTGCATATTCTTGATCTTCGAACCATGAGTTGGACTTCCCCTGAGTTGAAAGGTGATTTGCCTATCCCTAGGGACAGTCATAGTACACTTGCAATTGGGAACAAGCTTATTGTGTATGGTGGAGACTCCGGTGATCAGTATCATGGCAATGTTCATATGCTTGATATGACAACAATGACTTGGTCTAAATTGTCAATTCAAGGTTCTCCACCAGGAGTCAGGGCAGGTCATGCTGCAGTGAACATTGGAACCAAGGTCTATATCATTGGAGGAGTTGGAGATAAACGTTACTATAATGACGTTTGGATCTTTGATATATGCAATTTTTCATGGACTCAACTTGATATACGTTTTCACCAGCCACAAGGGCGATTTTCTCATACAGCTGTTGCTGCTGGCATGGATATTGCAATATATGGCGGGTGTGGTGAAGATGAACGTCCTCTCAATGAATTGTTAGTGTTGCAGGTTGGAGCAGAGCATTTAAATGGAGTTTACTACATTCCCATGTGCAAACCTTTTGGAACTTATTGGAATCAAGAAAAGAAGATTATCCCAGGAGAAGCAGATGCCAACTCGAAAACTTTACTCGTGAGGAATAACGTGGAAGCTTTTGGCAAAGGAGCTTATGAAGTTGCATCAGAAAAATTGCCACCTTATCACTTTGATTCAGATACTTCACGACAGAAGAGGAGGAGAATTGCTGCTGCAAAGGTGTGCGATGTTGAATCAGAACAAGAAGAAAACTTTCTTACATTGTCCCTTCATTCATTTCCATGTCAATCCGATCAAGAACAGACCCCAAGTCAAAAAGCAAAGACATTGTTTCCATCCACTTGCCAATACAACAATGGCTCAAATTATAAGAGAACTTTGAAGAATGTTCATTTCCTACAACATCAACTAAAACAAGAACATTGCCTTTATGTTCGTGAGGATAGAAAAAGAGCTCAACTTCAGGCTGCAGAGCAGAAATCCATGGGGCGAGGACCAATTCAACACCTGATTGGTGCTGAAGTTCGGGGGAGAGTTGATGGACCCTTTGACTCAGTTTCGCTCTCTCCTGCAGCTGTGAATGGAAGGATTTTCAGGGGGGTCATATTTTCACCTGGAGCAGCAGGAGTTGTCTCAAAAGGGGGCAGTGTCGAACCAAAGTGTTCTCTAACAAGTTCTTTTCCTTTTTCCTCTCAAGCATATTTGAACTCCAATCATGTGGGTAATTTAACGGCTTCCCAACAAGCACCTATTCGTTTGCATGCAGAGCCATGCCATGGTTCATGGCAAACGCCAGTGGCATTACCATTTCCAATCATTCGAGGCACTCCAAGTGTTGTTTCCAAGGAGAATAAAATCAATAGTGACCTTCAAGGGTTGGTTTTAACCCTCGGAGGACCTGCTAGTGGACACCCTCAGGTAAAACATTGA 2154 0.4285 MFSLHPSLAVGCHSDLDLKAPIFSCLLILIVDASLGLLMSSLNQSLFPYDSSSLTVSSSVFNPYAFLSNRHHTLTLTLHTSQHRRQMSSLLPQVAKNKAMWLNPKVLGFNPPERWGHSACFSKGLMYVFGGCCGGLHFCDVLTLDLNKMVWSKLTTTGEKPGPRDSHSAVLVGHKMIVFGGTNGFKKVNHIHILDLVTKEWVRPECKGNPPSPRESHTATLVGDERIVIFGGSGEGHANYLNDLHILDLRTMSWTSPELKGDLPIPRDSHSTLAIGNKLIVYGGDSGDQYHGNVHMLDMTTMTWSKLSIQGSPPGVRAGHAAVNIGTKVYIIGGVGDKRYYNDVWIFDICNFSWTQLDIRFHQPQGRFSHTAVAAGMDIAIYGGCGEDERPLNELLVLQVGAEHLNGVYYIPMCKPFGTYWNQEKKIIPGEADANSKTLLVRNNVEAFGKGAYEVASEKLPPYHFDSDTSRQKRRRIAAAKVCDVESEQEENFLTLSLHSFPCQSDQEQTPSQKAKTLFPSTCQYNNGSNYKRTLKNVHFLQHQLKQEHCLYVREDRKRAQLQAAEQKSMGRGPIQHLIGAEVRGRVDGPFDSVSLSPAAVNGRIFRGVIFSPGAAGVVSKGGSVEPKCSLTSSFPFSSQAYLNSNHVGNLTASQQAPIRLHAEPCHGSWQTPVALPFPIIRGTPSVVSKENKINSDLQGLVLTLGGPASGHPQVKH* 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1923 717 PANTHER OS01G0300900 PROTEIN 87 711 - -
Gso19g1923 717 SUPERFAMILY Kelch motif 157 401 IPR015915 GO:0005515
Gso19g1923 717 PANTHER KELCH REPEAT DOMAIN 87 711 - -
Gso19g1923 717 Pfam Kelch motif 214 267 - -
Gso19g1923 717 Gene3D - 94 205 IPR015915 GO:0005515
Gso19g1923 717 Pfam Galactose oxidase, central domain 125 171 - -
Gso19g1923 717 Pfam Kelch motif 317 357 IPR006652 GO:0005515
Gso19g1923 717 Gene3D - 206 428 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1923 Gso-Chr19 47951787 47956236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1923 101 570 Acyl Lipid Metabolism Gene Families AT3G05420 28.169 1.43e-37 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1923 K20285 - gmx:100796366 1460.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1923 19 47951787 47956236 Gso19g1923 19 47951787 47956236 ECH
Gso19g1923 19 47951787 47956236 Gso3g1962 3 45156001 45160437 GST
Gso19g1923 19 47951787 47956236 Gso10g1343 10 39764682 39769848 PCT
Gso10g1343 10 39764682 39769848 Gso19g1923 19 47951787 47956236 PCT