Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1343 ATGGGGTCTCTGGTTGCTGAAACAGCCATGAAGAAACCAATGTGGTTGTATCCAAAGGTTTTGGGTTTTAATCCTTCTGAAAGATGGGGACACTCTGCTTGCTTCTCTGGGGGGCTTATGTATGTCTTTGGGGGCTGTTGTGGGGGGCTACATTTCGGAGATGTTCTGTGTTTGGACCTTGAAAAAATGGATTGGAGCAAGCTTGCCACCACAGGTGAAAAGCCAGGCCCTAGAGATAGCCACAGTGCTGTTCTTGTAGGGCACAAAATGATAGTTTTTGGTGGCACAAATGGGTTGAAGAAGGTGAATGACACTCATATATTGGACCTTGTTACCAAGGAGTGGTTTCGTCCAAAATGTGAAGGGACTCCTCCTTCTCCAAGGGAAAGTCACACTGCAACCCTAGTTGGGGATGAAAGACTAGTGATTTTTGGTGGCAGTGGAGAAGGTGAGGCAAACTATTTGAATGATTTGCATGTTCTAGACCTTCGAACCATGAGGTGGACTTCTCCTACGGTCAAAGGTGATTTTCCTGTGCCTAGGGACAGTCACAGCACTCTTGCAATTGGGAACAAGCTTATTATGTATGGTGGAGACTGTGGTGATCAGTATCAGGGTGATGTTAATGTTCTTGACATGGATACGATGAGTTGGTCAAGGTTGAGAATTCAAGGTTCTTCCCCAGGAGTCAGGGCAGGCCATGCGGCTGTGAATATTGGAACCAAGATCTACATCATTGGAGGGGTAGGAGATAAACGTTATTATAATGACATATGGGTCTTTGATATCTGCACTTGTTCGTGGACTCAGCTTGATATTCGTGGTCAACAACCACAGGGTCGGTTTTCTCACACAGCTGTTGTTGCAGACATGGATATTGCCATATATGGCGGCAGGTGTGGGGAAGATGAGCGTCCTTTGAACGAATTGTTAGTGTTGCAGCTTGGAGCAGAGCATCCAAATGGGCGTTACAACATTTCCATGTGCAAAGTTTTTGGAACTTGTTGGAACCATGAAAAGAGGACCATACCTGGAGGAGCAGATACCAACTCGACAACTCCACGCAATGGGAATAATAATATGGAAGTCTTGGGTAAATGGGCTTATGAAGTTGTATCGGATAAAGTGAACCCTTGTCACTTTGATTCTGGCACATCACAACAGAAGAGGAGGAGAATTGCTATTGCAAAGGTGTGGGATGTTGAATCAGAACAAGAAGAACATTCTCTTTCACTGTCCCAGCATTCATCTCCATCTCAATCTGATCAAGAACAGACCCCAGGTCAAAAATCAAATGTTTCTGTCATGGATGCTCAGAGTTATCATTGGTTCAAACAGATCAATAAAAGTCCAAGCTATTGCCAGCTTGACAATATCCCAAGTAATAACACAGCTTTGAAGAATATCACACAACGAAGTGTTCATCTCATAGAAAATCAACCAAAACAAGAACATTATCTTCATGTTGATGAGGATCGAAAAGGAGCTCGACATACTCAACACCTGATTGGTGCTGAAGTTCGGGGGAAAGTTGATGGAGCCTTTGATTCAGGTTTACTCATGACTGCAGCTGTGAATGGAAGAGTTTTCAGAGGAGTATTATTTGCACCAGGAGCAGGAGTATTCTCCACAAGTGTTGAGCCAAAGTGTTCTGTATCATGTTCATTTCCCTCCACTCAACCATTTATGAACTCAAATCATCATGTGAGGGATTCTCAGCAAGTAGCAAATTGTTCGCGTGCAGAGCCCTGCCACGGCATAAGCCAACCTGTGCTAGCTCAGCCAACACCAATCATGAGAGGCACTACTGTGTCTTTAGCCAAAGAGCATAAAGTGAGGAGTGACCTTCAAGGGTTGGTTTTGACACTTGGAGGGCCTGCAAGTGGAAACCATGCTTGA 1899 0.4455 MGSLVAETAMKKPMWLYPKVLGFNPSERWGHSACFSGGLMYVFGGCCGGLHFGDVLCLDLEKMDWSKLATTGEKPGPRDSHSAVLVGHKMIVFGGTNGLKKVNDTHILDLVTKEWFRPKCEGTPPSPRESHTATLVGDERLVIFGGSGEGEANYLNDLHVLDLRTMRWTSPTVKGDFPVPRDSHSTLAIGNKLIMYGGDCGDQYQGDVNVLDMDTMSWSRLRIQGSSPGVRAGHAAVNIGTKIYIIGGVGDKRYYNDIWVFDICTCSWTQLDIRGQQPQGRFSHTAVVADMDIAIYGGRCGEDERPLNELLVLQLGAEHPNGRYNISMCKVFGTCWNHEKRTIPGGADTNSTTPRNGNNNMEVLGKWAYEVVSDKVNPCHFDSGTSQQKRRRIAIAKVWDVESEQEEHSLSLSQHSSPSQSDQEQTPGQKSNVSVMDAQSYHWFKQINKSPSYCQLDNIPSNNTALKNITQRSVHLIENQPKQEHYLHVDEDRKGARHTQHLIGAEVRGKVDGAFDSGLLMTAAVNGRVFRGVLFAPGAGVFSTSVEPKCSVSCSFPSTQPFMNSNHHVRDSQQVANCSRAEPCHGISQPVLAQPTPIMRGTTVSLAKEHKVRSDLQGLVLTLGGPASGNHA* 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1343 632 Gene3D - 172 379 IPR015915 GO:0005515
Gso10g1343 632 Gene3D - 14 171 IPR015915 GO:0005515
Gso10g1343 632 Pfam Galactose oxidase, central domain 231 278 - -
Gso10g1343 632 PANTHER KELCH REPEAT DOMAIN 1 630 - -
Gso10g1343 632 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 129 417 IPR011047 -
Gso10g1343 632 MobiDBLite consensus disorder prediction 406 434 - -
Gso10g1343 632 Pfam Galactose oxidase, central domain 37 85 - -
Gso10g1343 632 Pfam Galactose oxidase, central domain 139 189 - -
Gso10g1343 632 Pfam Galactose oxidase, central domain 87 135 - -
Gso10g1343 632 MobiDBLite consensus disorder prediction 410 434 - -
Gso10g1343 632 PANTHER OS01G0300900 PROTEIN 1 630 - -
Gso10g1343 632 SUPERFAMILY Kelch motif 19 221 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1343 Gso-Chr10 39764682 39769848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1343 15 415 Acyl Lipid Metabolism Gene Families AT3G05420 31.354 1.69e-41 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1343 K20285 - gmx:100801275 1278.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1923 19 47951787 47956236 Gso10g1343 10 39764682 39769848 PCT
Gso3g1962 3 45156001 45160437 Gso10g1343 10 39764682 39769848 PCT
Gso10g1343 10 39764682 39769848 Gso19g1923 19 47951787 47956236 PCT
Gso10g1343 10 39764682 39769848 Gso3g1962 3 45156001 45160437 PCT