Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1938 ATGGCCAAGGAAACTTCTCTATGCCTCTTGTTCCTCTCTTTTCTCATTTTCTGCTCTTCAGGGACTTCTGTATCTTCTTCTTCATCGTCCGTTGGTACAACATTCTTCCAAAAAAGCAAGATCTCCAAATCTGAGATTCGATTTTCTGTATCAGATTGCAAGATTTTGAGCACTCTGACCAACACCAACCTGTCAGTTGATTTCTTCTTAAACGAAAGCCTGGTTGAAAATTTTGTTTCTTCAAAATCAAAATCATCTCTAGTTTCATGGCTAGAAACTCATCTCATGAACATTATTCCCCAAGTTGACATCAGAAGCATCGTTGTTAGATGTGGCAGTGAGTGCTTAGGCCAATATGAGATGCCTTCACTCATACCTATTCTCAAATCAATTCATTCATTTCTCAGCAATCTTCAACTGAGAAGGGAAATAAAAGTCTCCGTGGCCTTTCCTCTTTCATTCTTAGAGAATTTGAATGCATTGTATGGAAATGATCTCCTTAGGATTGTTATGTTTTTGAAGAAAATAGATTCATTTATCATGATAGAAGACATCATTGGTGGAGAATTGAGTACTGTTCAGTCTGTTATCGAAAGAGCCACCCTTGCTGCTTCTATTCTTCCCTGCAAAGATGTTCCTGTGGTTCTCACAATCAAGAGCCATGATATTCCCAATTCAATGGAATTATCTCAATTCAGTGAGGCAGTATCCAAGTATCTTGAAGCGATATCTCATTTTACAAACAGAATAGTTGCATTGATTGCACAAGTATACACACTCAATGATTTTTTACTGCTCAAAAGAGAAGAGGGAGAAGAGATATGTCCTTTGTCCCTAAGAGAAAATCCAAGCAAAGTCCACATCAGAAGAACTCTACAAGACACAACCAACACACCTACCACAGTTTTCCCCACAAATCCAACCCCACCTTCACCAGTAATCACACCTCCAGATACACCAACCATCATCACAGTTCCTTCCACCAATCCTGTCACGGTTTCCCCCACCAATCCAGCTTCAACACCTGTCACAGTTCCTTCTACCACACCAGTTGTTCCCTTACCCCCTACAAATCCAGCCAATCCAGTTACCAATCCTGTGGCCTCTTATCCACCACCATCATCAGGAAGTGTTCCTGTCACAAGTGCACTGCCTCCTCCTCCAAGCACAAATGCTCAAGCCATGCCAGCGGGGCAGAGTTGGTGTGTGGCAAAGACTGGAGTTCCACAAGCTTCTCTTCAATCAGCACTGGACTATGCTTGTGGAATGTCAGGTGTGGATTGTTCACAGATACAGCAAGGTGCGAGTTGTTACAATCCAAATTCATTACAAAACCATGCTTCTTTTGCCTTCAACAGCTACTACCAAAAGAATCCTGCGCCTACAAGCTGTGACTTTGGAGGCACTGCCAACATAGTGAACACCAATCCGAGCTCGGGTTCTTGCATCTACCCATCATCTTCAGGGGCAGGCGCATCCGGCTCTGGTACTGGTAGCCCAGTTTTAGGGTCCCAAAGCCCTCCTGATTTAAATACCTCGTATTCAGCTGGTCTGAGACCTCTTCTTGGCTGCATGGTTCTGGCAATATCATTAGTCACTGTAAGACTCACTACATGA 1617 0.4304 MAKETSLCLLFLSFLIFCSSGTSVSSSSSSVGTTFFQKSKISKSEIRFSVSDCKILSTLTNTNLSVDFFLNESLVENFVSSKSKSSLVSWLETHLMNIIPQVDIRSIVVRCGSECLGQYEMPSLIPILKSIHSFLSNLQLRREIKVSVAFPLSFLENLNALYGNDLLRIVMFLKKIDSFIMIEDIIGGELSTVQSVIERATLAASILPCKDVPVVLTIKSHDIPNSMELSQFSEAVSKYLEAISHFTNRIVALIAQVYTLNDFLLLKREEGEEICPLSLRENPSKVHIRRTLQDTTNTPTTVFPTNPTPPSPVITPPDTPTIITVPSTNPVTVSPTNPASTPVTVPSTTPVVPLPPTNPANPVTNPVASYPPPSSGSVPVTSALPPPPSTNAQAMPAGQSWCVAKTGVPQASLQSALDYACGMSGVDCSQIQQGASCYNPNSLQNHASFAFNSYYQKNPAPTSCDFGGTANIVNTNPSSGSCIYPSSSGAGASGSGTGSPVLGSQSPPDLNTSYSAGLRPLLGCMVLAISLVTVRLTT* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1938 538 Gene3D - 393 489 - -
Gso3g1938 538 Pfam X8 domain 401 470 IPR012946 -
Gso3g1938 538 Gene3D Glycosidases 19 183 - -
Gso3g1938 538 MobiDBLite consensus disorder prediction 327 353 - -
Gso3g1938 538 MobiDBLite consensus disorder prediction 327 347 - -
Gso3g1938 538 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 134 498 IPR044965 GO:0004553|GO:0005975
Gso3g1938 538 SMART X8_cls 400 484 IPR012946 -
Gso3g1938 538 PANTHER CARBOHYDRATE-BINDING X8 DOMAIN PROTEIN 134 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1938 Gso-Chr3 44941038 44944151 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1938 44 487 Glycoside Hydrolase AT2G05790 26.915 1.16e-28 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1938 - - gmx:100809473 888.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1902 19 47743623 47746774 Gso3g1938 3 44941038 44944151 GST
Gso3g1938 3 44941038 44944151 Gso10g1319 10 39492684 39496060 PCT
Gso10g1319 10 39492684 39496060 Gso3g1938 3 44941038 44944151 PCT