Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1902 ATGGCCAAGGAACCTTCTCTATGCCTCTTGTTCCTCTCTTTTCTCCTTTTCTGCTCTTCTGGGACTACTGCATCTTCATCATCTGCTGCTACTACATTCTTCCAGAAAAGCAAGATCTCTAAATCTGAGATTCGGTTTTGTGTATCTGATTACAAGTTTTTGAGCACTCTCACCAACACCAACCTGTCAGTTGATTTCTTCTTAAATGAAAGCCTGGTTGAAAATTTTGTTTCTTCAAAATCAAAATCATCTCTGGTTTCATGGCTAGAAACTCGTCTTTTGAACATTTTTCCACAAGTAGACATCAGAAGCATCGTTGTTAGATGTGGCAGTGAGTGCTTACGCCCAGATGAGATGCCTTTGCTCATACCTGTTCTCAAATCAATTCATTCATTTCTCAGCAATCTTCAACTAAGCAGGGAAACTAAAGTCTCCGTGGCTTTTCCACTTTCATTCTTAGAGAATTTGAATGCATCATATGAGAGTGATCTCCTTAGGATTGTTATGTTTTTGAATAAAATAGATTCATTTGTCTTGATAGAAGACATCATTGATGGGGAATCGAGCACTTTTCAGTCTGTTATTGAAAGAGCCACCCTTGCTGCTGCTATTCTTCCCTGCAAAGATGTTCCTGTGGTTTTCACAATCAAGAGCCATGATATTCCAAGTTCAATGGAATTAGCTCAATTTACTGAGGCAGTATCCAAATATCTTGAAGCAGTTTCTCATTTTACAAAGAGAATAGTTGCATTCTATGCACAAGTACGCACAACCAATGATTTTGTACTACTCAAAAAAGAAGAGGGAGAAGAGATATTTCCTTTGTTCCTAAGAGAAAATCCAAGCAAAGTCCACATCAGAAGAACTCTACAAGACACAACCAACTCACCAACCCCACCTTCACCAGTAATCACACCTCCAGATACACCAACCATCATCACAGTTTCCCCCACCAATCCAGCTTCAACACCTGTCACAGTTCCTTCTACCACACCAATTGTTCCCTTAGCCCCTACAAATCCAGCCAATCCGGTTACCAACCCTGTGACCTCTTCTTATCCACCACCATCATCAGGAAGTGTTCCTGTCACAAGTGCACTGCCTCCTCCTCCAAGCACAAATGCTCAAGCCATGCCAGGGGGGCAGAGTTGGTGTGTGGCAAAGACTGGAGTTCCACAAGCTTCTCTTCAATCAGCACTGGACTATGCTTGTGGAATGTCAGGTGTGGATTGTTCACAGATACAGCAAGGTGGGAGTTGTTACAATCCAAATTCATTACAAAACCATGCTTCTTTTGCCTTCAACAACTACTACCAAAAGAATCCTGCGCCAACAAGCTGTGACTTTGGAGGCACTGCCACCATAGTGAACACCAATCCGAGCTCGGGTTCTTGCATCTACCCATCATCTTCAGGGGCAGGCACATCCGGCTCTGGTACTGGTAGCCCAGTTTTAGGGTCCCAAAGCCCTCCTGATTTAAATACCTCCTATTCGGCTAGTCTGAGACCTTTTCTTGGCTGCATGGTTCTGGCAATATCATTAGTCACTGCAAGACTCACTGCATGA 1566 0.4304 MAKEPSLCLLFLSFLLFCSSGTTASSSSAATTFFQKSKISKSEIRFCVSDYKFLSTLTNTNLSVDFFLNESLVENFVSSKSKSSLVSWLETRLLNIFPQVDIRSIVVRCGSECLRPDEMPLLIPVLKSIHSFLSNLQLSRETKVSVAFPLSFLENLNASYESDLLRIVMFLNKIDSFVLIEDIIDGESSTFQSVIERATLAAAILPCKDVPVVFTIKSHDIPSSMELAQFTEAVSKYLEAVSHFTKRIVAFYAQVRTTNDFVLLKKEEGEEIFPLFLRENPSKVHIRRTLQDTTNSPTPPSPVITPPDTPTIITVSPTNPASTPVTVPSTTPIVPLAPTNPANPVTNPVTSSYPPPSSGSVPVTSALPPPPSTNAQAMPGGQSWCVAKTGVPQASLQSALDYACGMSGVDCSQIQQGGSCYNPNSLQNHASFAFNNYYQKNPAPTSCDFGGTATIVNTNPSSGSCIYPSSSGAGTSGSGTGSPVLGSQSPPDLNTSYSASLRPFLGCMVLAISLVTARLTA* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1902 521 PANTHER CARBOHYDRATE-BINDING X8 DOMAIN PROTEIN 134 481 - -
Gso19g1902 521 SMART X8_cls 383 467 IPR012946 -
Gso19g1902 521 Pfam X8 domain 384 454 IPR012946 -
Gso19g1902 521 Gene3D - 377 473 - -
Gso19g1902 521 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 134 481 IPR044965 GO:0004553|GO:0005975
Gso19g1902 521 MobiDBLite consensus disorder prediction 345 360 - -
Gso19g1902 521 MobiDBLite consensus disorder prediction 345 364 - -
Gso19g1902 521 Gene3D Glycosidases 17 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1902 Gso-Chr19 47743623 47746774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1902 357 470 Glycoside Hydrolase AT2G05790 44.915 9.72e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1902 - - gmx:100789503 863.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1902 19 47743623 47746774 Gso3g1938 3 44941038 44944151 GST
Gso19g1902 19 47743623 47746774 Gso10g1319 10 39492684 39496060 PCT
Gso10g1319 10 39492684 39496060 Gso19g1902 19 47743623 47746774 PCT