Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1319 ATGGCCAAGGAAGCTTCTCTGTGCCTCTTGTTTCTCTTCTCCTTTCTCAGTACCTCCTGTTCTGGATCTCTGGTGGGTTTTTCCTACCGTGAGAGAGGAGACACTTCAACATCTGCTAGAACCATATCATTCCTCCAGCAAAGCAACGTTTCGCCAACTCAGATTCGAATTTTTGTCACAGATCATAGGATTTTGAGCACTCTCAGCAACTCCAAAGTGCTAACTGATGTCTACTTGAACAAAAGTCAAGTTGAAAATTTCATTATTTCAAAACCCTCTGAACTAAAAGCTCATCTACTTAACATTCTCTCACATTCAAACATCAAGAGCATCATTGCTAGCTGTGGCAGTGAGTGCTTAGCACAAAATGAAATGCCTTTGTTCTTACATGCTTTGAAATCAATTGGTTCAGTTCTCAGAGAGCTTCACTTAGGAAGGGAGGTAAAAATCTCAGTAGCATATCCACTTTCATTCTTAGAAAAGTTGAATGCATCGCATGAAAACAGTATTCGTAGGATTCTTTCATTTATAAAGGAAACGAAATCCTTTGTCATGGTAGAAGACAGCATTGGTGGAGAATTAAGCATGGGGGATCACTTTGTTCATGCTATCATCAAACGAGCCACTCTTGCTGCTTCCATTCTTCCTTGCAAGGATGTTCCCATTGTTCTGACAATAAAAAGCACAGTTATCCTCCCTTCAATGGAATTAGCTCAATTCAGTGAGAAGATATCCAAATATCTAGAATCCGAAACTCATATTAGAAAAAGAATAGCTGCATTATATATAGAGGTGCATTCAGCAAAAGATTTTGCTAGCAAAAAACTCAAAAGGAGAAGTCTAGATGATACAACCAACCCAACAAACACAGTTTTCCCCACAAATCCAGCATCATCCACACCAATCATTACACCACCAGATACACCAACAATCATAACAGTTCCTGCCACAAATCCTGTCACAATTTCCCCTTCCAATCCTGCTGCAATGCCTGTGACAGTTCCTTCTACCACACCAGTGCCTAATCCTATAACCCCCACAAATCCAGCCAATTCACCAGTACCTGTGAGCAATCCAGCTACGACTCCTATAGCGACACCACCGCCAGTAACCAACCCTGTGACATCTTATCCACCTCCATCAGGAAATGTTCCTCCCGTCGTAAACCCGCAACCACAACCACCTCCTGCAAACACTAATGCTCCTGCCATTCAGGGGCAGAGTTGGTGTGTTGCAAAGCAGGGAGCTCCTGAAGCTTCTCTTCAATCAGCACTTGACTATGCTTGTGGAATGGGTGGTGCTGATTGTTCTCAAATCCAGCAGGGTGGGAATTGCTACAGTCCAGTTACTTTGCAGAACCATGCTTCTGTTGCCTTCAACAGCTACTACCAGAAGAATCCAGCTCCAACAAGCTGTGACTTTGGAGGGACTGCTACTTTAGTTAACACAAATCCAAGCACGGGTTCATGCATTTTCCCATCATCTTCATCGTCATCATCAACAACAACAATGCCAAAGTCATCACCCCCGACACCACCTACACAATCAAGTCCAATAGCACTACCACCACCAAGTCCATTAACACCTGAACCATCAATTCCAACAGCACCACCAACATCTTCATCTTCAGGAACAGGCCCTTTCGGGTATGGTGCCCCACCTTCAGAGTTAAATTCAAGCAATCCAGCGTCAGGTATAATGCCAGGTTTTGCTTCTGATAGCCCTCCTGTTGTAAATACCACTTCGGTGTCGCGTTCTGTGGGTTTGAGACCTTTTGTTGGCTTCACTATTCTGATGGTATCATTTGGCACTACGAGACTCAGTATGCACCCATAG 1836 0.4363 MAKEASLCLLFLFSFLSTSCSGSLVGFSYRERGDTSTSARTISFLQQSNVSPTQIRIFVTDHRILSTLSNSKVLTDVYLNKSQVENFIISKPSELKAHLLNILSHSNIKSIIASCGSECLAQNEMPLFLHALKSIGSVLRELHLGREVKISVAYPLSFLEKLNASHENSIRRILSFIKETKSFVMVEDSIGGELSMGDHFVHAIIKRATLAASILPCKDVPIVLTIKSTVILPSMELAQFSEKISKYLESETHIRKRIAALYIEVHSAKDFASKKLKRRSLDDTTNPTNTVFPTNPASSTPIITPPDTPTIITVPATNPVTISPSNPAAMPVTVPSTTPVPNPITPTNPANSPVPVSNPATTPIATPPPVTNPVTSYPPPSGNVPPVVNPQPQPPPANTNAPAIQGQSWCVAKQGAPEASLQSALDYACGMGGADCSQIQQGGNCYSPVTLQNHASVAFNSYYQKNPAPTSCDFGGTATLVNTNPSTGSCIFPSSSSSSSTTTMPKSSPPTPPTQSSPIALPPPSPLTPEPSIPTAPPTSSSSGTGPFGYGAPPSELNSSNPASGIMPGFASDSPPVVNTTSVSRSVGLRPFVGFTILMVSFGTTRLSMHP* 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1319 611 MobiDBLite consensus disorder prediction 491 505 - -
Gso10g1319 611 MobiDBLite consensus disorder prediction 537 567 - -
Gso10g1319 611 SMART X8_cls 408 492 IPR012946 -
Gso10g1319 611 MobiDBLite consensus disorder prediction 283 298 - -
Gso10g1319 611 MobiDBLite consensus disorder prediction 280 303 - -
Gso10g1319 611 MobiDBLite consensus disorder prediction 342 402 - -
Gso10g1319 611 MobiDBLite consensus disorder prediction 491 582 - -
Gso10g1319 611 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Gso10g1319 611 Pfam X8 domain 409 479 IPR012946 -
Gso10g1319 611 PRINTS Proline rich extensin signature 284 296 - -
Gso10g1319 611 PRINTS Proline rich extensin signature 315 336 - -
Gso10g1319 611 PRINTS Proline rich extensin signature 339 355 - -
Gso10g1319 611 PRINTS Proline rich extensin signature 356 373 - -
Gso10g1319 611 PRINTS Proline rich extensin signature 374 399 - -
Gso10g1319 611 MobiDBLite consensus disorder prediction 360 399 - -
Gso10g1319 611 MobiDBLite consensus disorder prediction 506 536 - -
Gso10g1319 611 Gene3D Glycosidases 25 188 - -
Gso10g1319 611 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 141 576 IPR044965 GO:0004553|GO:0005975
Gso10g1319 611 Gene3D - 403 507 - -
Gso10g1319 611 PANTHER CARBOHYDRATE-BINDING X8 DOMAIN PROTEIN 141 576 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1319 Gso-Chr10 39492684 39496060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1319 369 495 Glycoside Hydrolase AT2G05790 47.287 5.52e-29 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1319 - - gmx:100794910 937.562
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1902 19 47743623 47746774 Gso10g1319 10 39492684 39496060 PCT
Gso3g1938 3 44941038 44944151 Gso10g1319 10 39492684 39496060 PCT
Gso10g1319 10 39492684 39496060 Gso19g1902 19 47743623 47746774 PCT
Gso10g1319 10 39492684 39496060 Gso3g1938 3 44941038 44944151 PCT