Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1927 ATGAAGCTCACAGGTTTCCTGCAAGCGGTGACTCTTGCTTTGGTGTTAGCCACCGTCTCTGCATCAGATCCTGATCCTCTTCAAGACCTCTGTGTCGCAGACCTTGCTTCAGCGGTTAAAGTGAATGGATTCACATGCAAAGATGCTGCCAAGGTAAATGCGAGTGATTTCTTCTCAGACATACTAGCCAAACCAGGTGCCACAAACAACACCTATGGCTCCCTAGTGACTGGAGCCAACGTTCAGAAAATCCCAGGACTCAACACCCTTGGCGTGTCTTTATCACGCATTGACTATGCCCCAGGTGGCATCAACCCACCTCACACGCACCCACGTGCCACCGAGGTAGTGTTTGTGCTTGAAGGAACACTAGATGTTGGGTTCATAACCACAGCCAACGTGCTCATATCAAAGAGCATAAGCAAGGGTGAAATATTTGTGTTCCCAAAAGGGTTGGTTCACTTCCAAAAGAACAATGGAAAGGAACAAGCTTCAGTGATTGCAGCATTCAACAGTCAATTGCCTGGCACACAGTCCATTGCTCTAACGTTGTTTGCAGCGACGCCACCGGTTCCAGACAATGTGTTAACCAAGGCGTTCCAGGTGGGTACCAAGGAGGTTGAGAAAATTAAGTCTAGGCTTGCTCCTAAGAAATAA 657 0.481 MKLTGFLQAVTLALVLATVSASDPDPLQDLCVADLASAVKVNGFTCKDAAKVNASDFFSDILAKPGATNNTYGSLVTGANVQKIPGLNTLGVSLSRIDYAPGGINPPHTHPRATEVVFVLEGTLDVGFITTANVLISKSISKGEIFVFPKGLVHFQKNNGKEQASVIAAFNSQLPGTQSIALTLFAATPPVPDNVLTKAFQVGTKEVEKIKSRLAPKK* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1927 218 Coils Coil 217 218 - -
Gso3g1927 218 PANTHER GERMIN-LIKE PROTEIN 13 216 - -
Gso3g1927 218 SUPERFAMILY RmlC-like cupins 23 213 IPR011051 -
Gso3g1927 218 PRINTS Germin signature 108 128 IPR001929 GO:0030145
Gso3g1927 218 PRINTS Germin signature 138 158 IPR001929 GO:0030145
Gso3g1927 218 PRINTS Germin signature 171 186 IPR001929 GO:0030145
Gso3g1927 218 ProSitePatterns Germin family signature. 103 116 IPR019780 GO:0030145
Gso3g1927 218 SMART Cupin_1_3 59 208 IPR006045 -
Gso3g1927 218 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 13 216 - -
Gso3g1927 218 CDD cupin_OxOx 23 214 - -
Gso3g1927 218 Pfam Cupin 62 207 IPR006045 -
Gso3g1927 218 Gene3D Jelly Rolls 22 216 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1927 Gso-Chr3 44803529 44805180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1927 10 218 Miscellaneous Gene Families AT3G05930 58.095 7.84e-87 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1927 - - gmx:100302722 414.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1891 19 47629817 47631381 Gso3g1927 3 44803529 44805180 GST
Gso3g1927 3 44803529 44805180 Gso10g1301 10 39081467 39083718 PCT
Gso10g1301 10 39081467 39083718 Gso3g1927 3 44803529 44805180 PCT