Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1891 ATGAAGCTCACAGGTTTCCTGCAAGCGGTGACTCTAACTGCTTTGGTGTTATCCATCTTCACTGCATCAGATCCCGATTCTCTTCAAGACCTCTGTGTCGCAGACCTTGCCTCAGCGGTTAAAGTGAATGGATTCACCTGCAAAGATGCTGGCAAGGTAAATGCGAGTGATTTCTTCTCAGACATACTAGCCAAACCAGGTGCCACAAACAACACGTATGGCTCCCTAGTGACTGGAGCCAACGTTCAGAAAATCCCAGGACTCAACACCCTTGGCGTGTCTTTGTCACGCATTGACTATGCCCCAGGTGGCATCAACCCACCTCACACGCACCCACGTGCGACCGAAGTAGTGTTCGTGCTTGAAGGAACACTAGATGTTGGGTTCATAACCACAGCCAATGTGCTCATTTCAAAGGCCATCAACAAGGGTGAGATATTTGTGTTCCCAAAGGGCTTAGTTCACTTCCAAAAGAACAATGGAAAGGAACCTGCTTCAGTTATTGCAGCATTCAATAGTCAGTTGCCTGGCACACAGTCCATTGCTCTAACCTTGTTTGCAGCCACACCACCACTTCCGGATAATGTGTTAACCAAGGCTTTCCAGGTGGGTACCAAGGAGGTTCAGAAAATTAAGTCTAGGCTTGCACCTAAGAAATAA 660 0.4773 MKLTGFLQAVTLTALVLSIFTASDPDSLQDLCVADLASAVKVNGFTCKDAGKVNASDFFSDILAKPGATNNTYGSLVTGANVQKIPGLNTLGVSLSRIDYAPGGINPPHTHPRATEVVFVLEGTLDVGFITTANVLISKAINKGEIFVFPKGLVHFQKNNGKEPASVIAAFNSQLPGTQSIALTLFAATPPLPDNVLTKAFQVGTKEVQKIKSRLAPKK* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1891 219 PANTHER GERMIN-LIKE PROTEIN 17 217 - -
Gso19g1891 219 SUPERFAMILY RmlC-like cupins 24 214 IPR011051 -
Gso19g1891 219 PRINTS Germin signature 109 129 IPR001929 GO:0030145
Gso19g1891 219 PRINTS Germin signature 139 159 IPR001929 GO:0030145
Gso19g1891 219 PRINTS Germin signature 172 187 IPR001929 GO:0030145
Gso19g1891 219 CDD cupin_OxOx 24 215 - -
Gso19g1891 219 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 17 217 - -
Gso19g1891 219 SMART Cupin_1_3 60 209 IPR006045 -
Gso19g1891 219 Pfam Cupin 63 209 IPR006045 -
Gso19g1891 219 ProSitePatterns Germin family signature. 104 117 IPR019780 GO:0030145
Gso19g1891 219 Gene3D Jelly Rolls 23 217 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1891 Gso-Chr19 47629817 47631381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1891 15 219 Miscellaneous Gene Families AT3G05930 58.738 2.20e-86 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1891 - - gmx:100791628 428.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1891 19 47629817 47631381 Gso19g1891 19 47629817 47631381 ECH
Gso19g1891 19 47629817 47631381 Gso3g1927 3 44803529 44805180 GST
Gso19g1891 19 47629817 47631381 Gso10g1301 10 39081467 39083718 PCT
Gso10g1301 10 39081467 39083718 Gso19g1891 19 47629817 47631381 PCT