Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1301 ATGGCTAACCATACCATGAAGCTGGTCAACTTGCTGCTTCTCGTGACTTTGGCTCAGCTCTTAGCCACCGCTATCTCTTCAGATCCTGACCTTCTTCAAGACCTCTGTGTCGCCGACCTTGCCTCAGGTGTGAAAGTGAATGGATTTACCTGCAAAGAAGCAACCAAGGTAAATGCCTCAGATTTCTTTTCCAACACACTAGCCAAACCAGGAGCCACAAACAACACCTTTGGTTCCTTGGTGACTGGAGCCAACGTTCAGAAAGTCCCAGGACTCAACACACTCGGTGTCTCTCTGTCAAGAATTGACTATGCCCCAGGTGGCATAAACCCCCCTCACACCCACCCACGTGCCACTGAGATTGTGTTTGTCCTTGAAGGCCAACTAGATGTGGGGTTCATAACCACATCCAATGTGCTCATATCAAAGACCATTAACAAGGGTGACATATTTGTGTTCCCAAAAGGCTTGCTTCACTTCCAAAAGAACAATGCTAAGGTTTCTGCTTCTGTGATTTCAGCCTTCAATAGCCAACTTCCAGGGACACAGTCCATTGCTACAACCTTGTTTGCTGCCACTCCATCTGTTCCAGACCATGTCCTGACCCAGACCTTCCAGGTTGGAACCAAGGAGGTTCAGAAAATCAAGTCTAGGCTTGCACCAAAAAAGTAA 672 0.4762 MANHTMKLVNLLLLVTLAQLLATAISSDPDLLQDLCVADLASGVKVNGFTCKEATKVNASDFFSNTLAKPGATNNTFGSLVTGANVQKVPGLNTLGVSLSRIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFITTSNVLISKTINKGDIFVFPKGLLHFQKNNAKVSASVISAFNSQLPGTQSIATTLFAATPSVPDHVLTQTFQVGTKEVQKIKSRLAPKK* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1301 223 SMART Cupin_1_3 65 213 IPR006045 -
Gso10g1301 223 Pfam Cupin 67 213 IPR006045 -
Gso10g1301 223 SUPERFAMILY RmlC-like cupins 28 218 IPR011051 -
Gso10g1301 223 CDD cupin_OxOx 28 219 - -
Gso10g1301 223 PANTHER GERMIN-LIKE PROTEIN 16 221 - -
Gso10g1301 223 Gene3D Jelly Rolls 27 221 IPR014710 -
Gso10g1301 223 PRINTS Germin signature 113 133 IPR001929 GO:0030145
Gso10g1301 223 PRINTS Germin signature 143 163 IPR001929 GO:0030145
Gso10g1301 223 PRINTS Germin signature 176 191 IPR001929 GO:0030145
Gso10g1301 223 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 16 221 - -
Gso10g1301 223 ProSitePatterns Germin family signature. 108 121 IPR019780 GO:0030145
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1301 Gso-Chr10 39081467 39083718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1301 13 223 Miscellaneous Gene Families AT3G05930 56.604 4.78e-86 252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1301 - - gmx:100817475 421.779
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1891 19 47629817 47631381 Gso10g1301 10 39081467 39083718 PCT
Gso3g1927 3 44803529 44805180 Gso10g1301 10 39081467 39083718 PCT
Gso10g1301 10 39081467 39083718 Gso19g1891 19 47629817 47631381 PCT
Gso10g1301 10 39081467 39083718 Gso3g1927 3 44803529 44805180 PCT