Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1903 ATGAGGATACCTTCAACTCTCGTGGAAGTGCTTCTGGTACTTGCATTGTTCTGTTGTAGCCTATGGACAGTGTGGAGCAGCACCACTCTTTGCCAACAGACGAACGAGGAAGTTCGACCTCACAGTGTCAGCATCACCGAATTTGGTGCAGTTGGCGATGGGGTCACTCTCAACACAAAAGCATTTCAGAATGCCATCTTCTACCTGAATTCCTTTGCAGACAAAGGTGGAGCAAAGCTTTTTGTTCCGGCAGGCCGGTGGTTGACTGGTAGTTTTGATCTCATCAGCCATCTAACTTTGTCGTTGGACAAGGATGCAGTAATTCTGGGATCAACGAACCCTGAAGATTGGCCAGTTGTTGATCCTCTACCGTCGTATGGGAGAGGAAGAGAGTTGCCAGGTGGAAGGCATAAGAGCCTCATTTATGGACATAATTTGACTGATGTTATCATAACAGGTAATAATGGAACTATCGATGGTCAAGGGAGTATCTGGTGGAACAGGTTTTGGAACAGAAGTCTGGATTATACACGTCCCCATTTGGTAGAATTGATGAATTCAACAGGGGTTCTCATTTCAAATTTAACCTTCTTGAATTCTCCATTTTGGACAATCCATCCTGTATATTGCAGCCAAGTTACAGTTCAGAATGTCAGGATCCTTGCTCCTCATGATTCGCCAAACACAGATGGGATTGATCCAGATTCTTCTGACAATGTATGCATTGAAGACTGTTATATAAGCACTGGTGATGATCTGATTGCCATCAAGAGCGGGTGGGATGAGTATGGCATTGCATATGGTCGCCCAAGCACAAACATTATCATCCACAGGCTAGTTGGTAGAACTCAAACAAGTGGGATTGCTATTGGAAGTGAGATGTCTGGTGGTGTATCTGAAGTTCATGCAGAAGATATTCAATTCTATGATTCATATAATGCAATCAGAATAAAGACTTCTCCTGGCAGGGGTGGTTACGTTAGAAACATCTATGTCTCTAACGTGACCTTGGCTAATGTAGATATTGCTATTACGTTCACTGGTTTATATGGGGAGCATCCAGATGATGCTTATAACCCAAATGCTCTACCTGTAATAGAAAAGATTACAATCAAGGATGTGGTAGGAGAAAATATCAAAACTGCAGGTCTTATAGAGGGTATAGAAGGTGACAATTTTGTCAACATTTGCCTATCAAACATCATCCTTAATGTGACCTCAAACTATCCATGGAACTGCTCCTACGTTAAAGGATATTCTGACTTGGTCCAACCAGAAGCTTGTGAGCCTCTCAAGGAGAGAATATTCCCTGGTCATTGTTCAGATTGTTACTATTTGACAAATCAAATTCAGAGTTCCAATAGTCAAAATAGAGCAGGACAAACTTCAGGTGACATAAGAGGTTGA 1407 0.4222 MRIPSTLVEVLLVLALFCCSLWTVWSSTTLCQQTNEEVRPHSVSITEFGAVGDGVTLNTKAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLSLDKDAVILGSTNPEDWPVVDPLPSYGRGRELPGGRHKSLIYGHNLTDVIITGNNGTIDGQGSIWWNRFWNRSLDYTRPHLVELMNSTGVLISNLTFLNSPFWTIHPVYCSQVTVQNVRILAPHDSPNTDGIDPDSSDNVCIEDCYISTGDDLIAIKSGWDEYGIAYGRPSTNIIIHRLVGRTQTSGIAIGSEMSGGVSEVHAEDIQFYDSYNAIRIKTSPGRGGYVRNIYVSNVTLANVDIAITFTGLYGEHPDDAYNPNALPVIEKITIKDVVGENIKTAGLIEGIEGDNFVNICLSNIILNVTSNYPWNCSYVKGYSDLVQPEACEPLKERIFPGHCSDCYYLTNQIQSSNSQNRAGQTSGDIRG* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1903 468 SUPERFAMILY Pectin lyase-like 34 431 IPR011050 -
Gso3g1903 468 PANTHER OS07G0245200 PROTEIN 6 450 - -
Gso3g1903 468 Pfam Pectate lyase superfamily protein 43 89 IPR024535 -
Gso3g1903 468 Pfam Glycosyl hydrolases family 28 138 417 IPR000743 GO:0004650|GO:0005975
Gso3g1903 468 SMART pbh1 271 292 IPR006626 -
Gso3g1903 468 SMART pbh1 298 319 IPR006626 -
Gso3g1903 468 SMART pbh1 237 269 IPR006626 -
Gso3g1903 468 SMART pbh1 327 348 IPR006626 -
Gso3g1903 468 SMART pbh1 210 236 IPR006626 -
Gso3g1903 468 Gene3D - 24 419 IPR012334 -
Gso3g1903 468 PANTHER PECTIN LYASE-RELATED 6 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1903 Gso-Chr3 44563648 44566953 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1903 1 459 Glycoside Hydrolase AT3G62110 66.809 0.0 620
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1903 - - gmx:100817309 959.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1866 19 47341358 47345229 Gso3g1903 3 44563648 44566953 GST
Gso3g1903 3 44563648 44566953 Gso2g0067 2 780683 785401 PCT
Gso3g1903 3 44563648 44566953 Gso10g1274 10 38724210 38728390 PCT
Gso2g0067 2 780683 785401 Gso3g1903 3 44563648 44566953 PCT
Gso10g1274 10 38724210 38728390 Gso3g1903 3 44563648 44566953 PCT