Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1866 ATGAGGATACCTTCAACTCTCGTGGAAGTGCTTCTTGTATTTGCATTGTTCTGTTCTAGCCCATGGACAGTGTGGAGCAGCAACACTCTTTGCCAACAGACGAACGAGGAAGTTCGACCTCACAGTGTCAGCATCACTGAATTTGGTGCAGTTGGCGATGGGGTCACTCTCAACACAAAAGCATTTCAGAATGCCATCTTCTACCTAAATTCCTTTGCAGACAAAGGTGGAGCAAAGCTTTTTGTTCCGGCTGGCCGGTGGTTAACTGGTAGTTTTGATCTCATCAGTCATCTAACTTTGTGGTTGGACAAGGATGCAGTAATTCTTGGATCAACGAACCCTGAAGATTGGCCAGTTGTTGATCCTCTACCGTCGTATGGGAGAGGAAGAGAATTGCCAGGTGGAAGGCATAAGAGCCTCATTTATGGGCACAATCTGACTGATGTTATCATAACAGGTAATAATGGAACTATCGATGGTCAAGGGAGTATCTGGTGGAACAGGTTTATGAACAGAACTCTGGATTATACACGTCCCCATTTGGTAGAATTGATGAATTCAACAGGGGTTCTCATTTCAAATTTAACCTTCTTGAATTCTCCATTTTGGACAATCCATCCTGTATATTGCAGCCAAGTTACAGTTCAGAATGTCAGGATCCTTGCTCCTCATGATTCACCAAACACGGATGGAATTGATCCAGATTCTTCTGACAACGTATGCATTGAAGACTGTTATATAAGCACTGGTGATGATCTGATTGCCATCAAGAGCGGGTGGGATGAGTATGGCATTGCATACGGTCGCCCAAGCACAAACATTATCATCCACAGGCTAGTTGGTAAAACTCAAACAAGTGGGATTGCTATTGGAAGTGAGATGTCTGGTGGTGTATCTGAAGTTCATGCAGAAGATATTCAATTCTATGATTCATATAATGGAATCAGAATAAAGACTTCTCCTGGCAGGGGTGGTTATGTTAGAAATATCTATGTCTCTAACGTGAGCTTGGCTAATGTAGATATTGCTATTTGGTTCACTGGTTCATATGGGGAGCATCCGGATGATGCTTATGACCCAAATGCTCTACCTGTAATAGAAAAAGTTACAATCAAGGATGTGGTAGGAGAAAATATCAAAACTGCAGGTCTTATAGAGGGTATAGAAGGTGACAATTTTGTCAACATTTGCCTGTCAAACATTATCCTTAACGTGACCTCAAACTATCCATGGAACTGCTCCTACGTTAAAGGATATTCTGACTTAGTCCAGCCAGAAGCTTGTGAGCCTCTCAAGGAGAGAATATTCCCTGATCATTGTTCAGATTGTTACTATTTGACAAATCAAATTCAGAGTTCGAATAGTCAAAATAGAGCAGGACAAACTTCAGGTGACATAAGAGGTTGA 1407 0.4186 MRIPSTLVEVLLVFALFCSSPWTVWSSNTLCQQTNEEVRPHSVSITEFGAVGDGVTLNTKAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSTNPEDWPVVDPLPSYGRGRELPGGRHKSLIYGHNLTDVIITGNNGTIDGQGSIWWNRFMNRTLDYTRPHLVELMNSTGVLISNLTFLNSPFWTIHPVYCSQVTVQNVRILAPHDSPNTDGIDPDSSDNVCIEDCYISTGDDLIAIKSGWDEYGIAYGRPSTNIIIHRLVGKTQTSGIAIGSEMSGGVSEVHAEDIQFYDSYNGIRIKTSPGRGGYVRNIYVSNVSLANVDIAIWFTGSYGEHPDDAYDPNALPVIEKVTIKDVVGENIKTAGLIEGIEGDNFVNICLSNIILNVTSNYPWNCSYVKGYSDLVQPEACEPLKERIFPDHCSDCYYLTNQIQSSNSQNRAGQTSGDIRG* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1866 468 Gene3D - 25 419 IPR012334 -
Gso19g1866 468 SMART pbh1 237 269 IPR006626 -
Gso19g1866 468 SMART pbh1 271 292 IPR006626 -
Gso19g1866 468 SMART pbh1 327 348 IPR006626 -
Gso19g1866 468 SMART pbh1 210 236 IPR006626 -
Gso19g1866 468 SMART pbh1 298 319 IPR006626 -
Gso19g1866 468 Pfam Pectate lyase superfamily protein 43 89 IPR024535 -
Gso19g1866 468 SUPERFAMILY Pectin lyase-like 36 431 IPR011050 -
Gso19g1866 468 Pfam Glycosyl hydrolases family 28 138 417 IPR000743 GO:0004650|GO:0005975
Gso19g1866 468 PANTHER OS07G0245200 PROTEIN 6 448 - -
Gso19g1866 468 PANTHER PECTIN LYASE-RELATED 6 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1866 Gso-Chr19 47341358 47345229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1866 1 459 Glycoside Hydrolase AT3G62110 67.238 0.0 630
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1866 - - gmx:100782602 966.452
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1866 19 47341358 47345229 Gso3g1903 3 44563648 44566953 GST
Gso19g1866 19 47341358 47345229 Gso2g0067 2 780683 785401 PCT
Gso19g1866 19 47341358 47345229 Gso10g1274 10 38724210 38728390 PCT
Gso2g0067 2 780683 785401 Gso19g1866 19 47341358 47345229 PCT
Gso10g1274 10 38724210 38728390 Gso19g1866 19 47341358 47345229 PCT