Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0067 ATGAAGAGACTTTCAACTTTGGTGGATGTGTTTTTGGTTCTTGCATTGTTCAGTTGTAGCACATGGACAGTGTGGAGCAGCTCATGCTGCAATCAGATAAACTTGAATGAAGTCCGGCCTCACAGTGTCAGTATTACTGAATTTGGAGCTGTTGGCGATGGGATCACTCTCAATACAAAAGCATTTCAGAATGCCATTTTCTACCTAAATTCATTTGCAGACAAAGGTGGAGCCAAACTTTTTGTCCCAGCTGGCCGGTGGTTAACTGGAAGCTTTGATCTCATCAGCCATCTAACTCTGTGGTTGGACAACGATGCAGTAATTCTTGGATCAACGAACTCTGATGACTGGCCAGTTGTGGATCCTCTACCATCATATGGTCGTGGAAGGGAGTTGCCTGGTGGAAGGCATAGAAGCCTCATTTATGGGTGCAATTTAACTGATGTTGTCATAACAGGTAACAATGGAACTATAGATGGTCAAGGGAGTATCTGGTGGAACAATTTTTGGAACAAAACACTGAATTATACACGTCCTCATTTGGTTGAGTTGATGAATTCAACTGGGGTTCTCATCTCAAATGTAACTTTCTTGAATTCACCATTTTGGACTATTCACCCTGTATATTGCAGCCATGTAACAATTCAGAACGTCACAATCATTGCTCCTCTTAGTTCACCAAATACTGATGGCATTAATCCAGACTCTTCAGACAATGTATGCATTGAAGACTGTTATATAAGCACTGGTGATGATCTGATTTCCATCAAAAGTGGATGGGATGGATATGGCATTTCATTTGGCCGACCCAGTACAAATATTAACATCCGCAGGCTCATTGGGAAGACAACGAGTGCAGGGATTGCTATCGGAAGTGAGATGTCTGGAGGAGTATCGGAAGTTCATGCAGAAGATATTTACATTTTTGATTCACATAGTGCAATTAGAATAAAAACTTCTCCTGGAAGGGGTGGTTATGTAAGAAATGTCTATATCTCTAACATGATCTTGGCTAATGTAGATATTGCTATTAGGTTTACTGGTTTATATGGAGAACATCCTGATGACACTTATGACCCAGATGCTCTACCGGTAATAGAAAGGATTACTATCAAGGATGTGATAGGGGTAAAAGTCAAACATGCCGGCCTTATACAGGGTATTAAAGGTGACAACTTTGTCAATATCTGCCTATCAAACATCACCCTTAATGTGAGCTCAAAATTGCCATGGAACTGCTCTTACATTAAAGGATTCTCTGACTTGGTTTCACCAGAAGCTTGTGAGCCTCTCAAAGAAAGAATATTCCCTGAGCATTGTTCAGACTGTTACTATTTACCAAACCACTTGAAGAGTTTGAGTAATCAAAACTGGGGTGCTTGGTTACTGTCTTGA 1395 0.4072 MKRLSTLVDVFLVLALFSCSTWTVWSSSCCNQINLNEVRPHSVSITEFGAVGDGITLNTKAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLWLDNDAVILGSTNSDDWPVVDPLPSYGRGRELPGGRHRSLIYGCNLTDVVITGNNGTIDGQGSIWWNNFWNKTLNYTRPHLVELMNSTGVLISNVTFLNSPFWTIHPVYCSHVTIQNVTIIAPLSSPNTDGINPDSSDNVCIEDCYISTGDDLISIKSGWDGYGISFGRPSTNINIRRLIGKTTSAGIAIGSEMSGGVSEVHAEDIYIFDSHSAIRIKTSPGRGGYVRNVYISNMILANVDIAIRFTGLYGEHPDDTYDPDALPVIERITIKDVIGVKVKHAGLIQGIKGDNFVNICLSNITLNVSSKLPWNCSYIKGFSDLVSPEACEPLKERIFPEHCSDCYYLPNHLKSLSNQNWGAWLLS* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0067 464 PANTHER PECTIN LYASE-RELATED 7 447 - -
Gso2g0067 464 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 29 - -
Gso2g0067 464 SUPERFAMILY Pectin lyase-like 37 431 IPR011050 -
Gso2g0067 464 PANTHER OS07G0245200 PROTEIN 7 447 - -
Gso2g0067 464 SMART pbh1 271 292 IPR006626 -
Gso2g0067 464 SMART pbh1 210 236 IPR006626 -
Gso2g0067 464 SMART pbh1 141 168 IPR006626 -
Gso2g0067 464 SMART pbh1 327 348 IPR006626 -
Gso2g0067 464 SMART pbh1 237 269 IPR006626 -
Gso2g0067 464 SMART pbh1 298 319 IPR006626 -
Gso2g0067 464 Pfam Glycosyl hydrolases family 28 138 417 IPR000743 GO:0004650|GO:0005975
Gso2g0067 464 Gene3D - 22 417 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0067 Gso-Chr2 780683 785401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0067 1 464 Glycoside Hydrolase AT3G62110 68.220 0.0 632
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0067 - - gmx:100786985 957.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0067 2 780683 785401 Gso10g1274 10 38724210 38728390 GST
Gso19g1866 19 47341358 47345229 Gso2g0067 2 780683 785401 PCT
Gso3g1903 3 44563648 44566953 Gso2g0067 2 780683 785401 PCT
Gso2g0067 2 780683 785401 Gso19g1866 19 47341358 47345229 PCT
Gso2g0067 2 780683 785401 Gso3g1903 3 44563648 44566953 PCT