Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1822 ATGAGGACCTTTTCCCTCTTTTCTTGTCTTTTTTTCTTTCTTTCTGTCTTTTCCACCACTCTGTTCCACCCTGGTCATTCCCTCCACCACCACCCTCACTCTGCCACACACAACTACAGAGATGCTCTCACCAAATCCATCATCTTCTTTGAGGGCCAGCGGTCAGGGAAGCTCCCTTCTAACCAGAGGATGTCTTGGAGGAGAGACTCTGGTCTCTCTGATGGCTCAGCCATGCATGTTGATTTGGTTGGAGGGTACTATGATGCTGGGGACAATGTCAAGTTTGGTTTTCCCATGGCCTTCACCACCACCATGCTTTCGTGGAGTGTTATTGAGTTTGGTGGGGTCATGAAAGGTGAGTTGCAGAATGCCAGAGAGGCCATTCGTTGGGCGACAGATTATCTTCTCAAAGCTACTGCACATCCAGACATCATTTATGTTCAGGTGGGAGATGCTGTGAAGGACCACGCTTGTTGGGAGAGACCCGAGGACATGGATACCCCAAGGAGTGTCTTTAAAGTAGATAAAAACAACCCTGGTTCTGATGTGGCTGCAGAAACTGCTGCTGCTCTTGCAGCTGCTTCTCTGGTTTTTAAAAAAGTTGATCCCACCTACTCCAAAACATTGGTTAGGAGAGCTATCCGTGTTTTCCAGTTTGCCGATAAATATAGGGGACCCTACAGCAATGGCTTGAAGCCCGTTGTGTGCCCCTTCTATTGTTCTTACTCTGGTTATCAGGATGAGCTGTTGTGGGGTGCTACTTGGCTTCACAAGGCTACTAAGAACCCAATGTACCTAAACTACATTAAGGTTAATGGACAGACCCTTGGGGCTGCAGATTCTGACAATACCTTTGGATGGGATAACAAGCATGTTGGAGCAAGGATACTGCTTTCTAAGGAATTTCTTGTTCGGAAGGTGCAAACACTACATGACTACAAGGGTCACGCGGACAATTTTATCTGTTCTGTTATCCCTGGCTCCTCTTCTTCCCAATTCACCCCAGGTGGTCTTCTATTCAAGATGGGTGATAGCAACATGCAATATGTAACATCCACCTCATTCATACTCTTAGCTTATGCTAAATACTTGACCAAAGCCCATGTGGTTGTGAACTGTGGTGGAACCATAGTAACTCCAAAGAGACTCCGAGCTATAGCCCAAAAACAGGTGGATTACTTGCTGGGAGACAACCCCTTGAAGATGTCTTATATGGTGGGGTATGGTCCACGGTACCCGCAAAGGATACACCACAGGGGCTCATCGCTGCCGTCCGTTGCTGTTCACCCTGGCAAGATCCAATGCTCAGCAGGATTCAGTGTGATGAACTCGCAATCACCCAACCCAAACATTCTAATGGGTGCAGTTGTTGGAGGGCCGGATCTGCACGATGGGTTCCCAGATGAACGGTCAGATTATGAGCAATCAGAACCAGCTACTTATATTAACGCACCACTTGTAGGAGCACTTGCTTATCTCGCACACTCCTTTGGGCAACTCTAG 1503 0.4757 MRTFSLFSCLFFFLSVFSTTLFHPGHSLHHHPHSATHNYRDALTKSIIFFEGQRSGKLPSNQRMSWRRDSGLSDGSAMHVDLVGGYYDAGDNVKFGFPMAFTTTMLSWSVIEFGGVMKGELQNAREAIRWATDYLLKATAHPDIIYVQVGDAVKDHACWERPEDMDTPRSVFKVDKNNPGSDVAAETAAALAAASLVFKKVDPTYSKTLVRRAIRVFQFADKYRGPYSNGLKPVVCPFYCSYSGYQDELLWGATWLHKATKNPMYLNYIKVNGQTLGAADSDNTFGWDNKHVGARILLSKEFLVRKVQTLHDYKGHADNFICSVIPGSSSSQFTPGGLLFKMGDSNMQYVTSTSFILLAYAKYLTKAHVVVNCGGTIVTPKRLRAIAQKQVDYLLGDNPLKMSYMVGYGPRYPQRIHHRGSSLPSVAVHPGKIQCSAGFSVMNSQSPNPNILMGAVVGGPDLHDGFPDERSDYEQSEPATYINAPLVGALAYLAHSFGQL* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1822 500 SUPERFAMILY Six-hairpin glycosidases 36 498 IPR008928 GO:0005975
Gso3g1822 500 PANTHER ENDO-1,4-BETA-GLUCANASE 5 500 - -
Gso3g1822 500 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 393 419 IPR018221 -
Gso3g1822 500 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 466 484 IPR033126 -
Gso3g1822 500 Pfam Glycosyl hydrolase family 9 39 490 IPR001701 GO:0004553|GO:0005975
Gso3g1822 500 Gene3D - 35 496 IPR012341 GO:0005975
Gso3g1822 500 PANTHER ENDOGLUCANASE 17 5 500 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1822 Gso-Chr3 43875135 43877763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1822 2 496 Glycoside Hydrolase AT1G02800 76.162 0.0 774
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1822 K01179 - gmx:100793900 983.786
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1822 3 43875135 43877763 Gso2g0141 2 1456377 1459269 PCT
Gso3g1822 3 43875135 43877763 Gso10g0147 10 1533514 1536364 PCT
Gso2g0141 2 1456377 1459269 Gso3g1822 3 43875135 43877763 PCT
Gso10g0147 10 1533514 1536364 Gso3g1822 3 43875135 43877763 PCT