Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0147 ATGACTTTCTCCTTTTCCTTCTTCACCATCACCACTCTGCTTTCTCTGTTCTCTCTAATTCTGCTTCATGCCAATGCCTTCCCAGTCCCCATACATCGCCACCCTCGCTTTGCCACTCATAACTACAGAGATGCTCTCACTAAATCCATTCTCTTCTTTGAAGGCCAGAGGTCAGGGAAGCTCCCTCCTAACCAGAGAATGTCTTGGAGGAGAGACTCTGGCCTCTCTGATGGCTCAGCCATGCACGTTGATTTGGTTGGAGGGTACTATGATGCTGGGGACAATGTGAAATTTGGTTTTCCCATGGCCTTCACCATCACCATGCTTTCATGGAGCGTTATTGAGTTTGGTGGGCTAATGAAAGGTGAGTTGCAGAATGCCAGAGAGGCCATTCGCTGGGGCACTGATTATCTTCTCAAAGCCACTGCACATCCAAACACCATTTATGTTCAGGTGGGAGACGCTAAGAAGGACCATGCTTGTTGGGAGAGACCAGAGGACATGGACACACTAAGAAGCGCGTTTAAAATAGATGCAAACACACCTGGTTCAGAAGTTGCCGCGGAAACTGCTGCAGCTCTTGCAGCTGCTTCTCTTGTTTTTAGAAGAAGTGACCCCACATACTCCAAAGTTTTAGTGAGGAGAGCCATCAGGGTCTTCCAGTTTGCTGATAAGTACAGGGGATCCTACAGCAATGCCTTGAAACCTTATGTGTGCCCCTTCTATTGCTCTTACTCTGGTTATCAGGATGAGCTGTTGTGGGGTGCTGCCTGGCTGCACAAGGCTACCAGGAATCCAATGTACCTAAACTACATCAAAGTTAATGGCCAGATCCTTGGGGCTGCAGAGTTTGACAACACCTTTGGGTGGGATAACAAGCATGCTGGAGCAAGAATACTTCTTTCCAAGGAATTCCTGGTTCAAAGGGTACAATCCCTCCATGACTACAAGGGTCATGCGGACAATTTCGTCTGTTCTCTAATTCCTGGAACCTCTTTTTCTTCCACTCAATATACCCCAGGTGGGCTTCTTTTCAAGATGAGTGATAGCAACATGCAGTATGTCACATCCACCTCCTTCCTACTGCTAACATATGCCAAATACTTGACCCAATCCCATATGCTTGTTAACTGTGGTGGAATCACAGTAACCCCAAGGAGACTCCGGACAATAGCTAAGAAACAGGTGGATTACTTGCTTGGAGACAACCCGTTGAAGATGTCGTACATGGTGGGGTATGGTCCACGGTACCCACGAAGGATACACCATAGGGGATCATCTCTACCGTCGATTGCTGTGCACCCGGGAAAGATCCAGTGTTCCGCAGGGTTCAGTGTGATGAATTCACAATCTCCCAACCCAAACATTCTAGTGGGGGCCATTGTTGGTGGACCGGATGAGCATGATAGGTTCCCAGATCAACGGTCAGATTATGAGCAATCAGAGCCAGCTACATACATTAACTCACCCCTTGTAGGAGCACTGGCCTATCTTGCACACTCATTCGGTCAACTCTAG 1518 0.4796 MTFSFSFFTITTLLSLFSLILLHANAFPVPIHRHPRFATHNYRDALTKSILFFEGQRSGKLPPNQRMSWRRDSGLSDGSAMHVDLVGGYYDAGDNVKFGFPMAFTITMLSWSVIEFGGLMKGELQNAREAIRWGTDYLLKATAHPNTIYVQVGDAKKDHACWERPEDMDTLRSAFKIDANTPGSEVAAETAAALAAASLVFRRSDPTYSKVLVRRAIRVFQFADKYRGSYSNALKPYVCPFYCSYSGYQDELLWGAAWLHKATRNPMYLNYIKVNGQILGAAEFDNTFGWDNKHAGARILLSKEFLVQRVQSLHDYKGHADNFVCSLIPGTSFSSTQYTPGGLLFKMSDSNMQYVTSTSFLLLTYAKYLTQSHMLVNCGGITVTPRRLRTIAKKQVDYLLGDNPLKMSYMVGYGPRYPRRIHHRGSSLPSIAVHPGKIQCSAGFSVMNSQSPNPNILVGAIVGGPDEHDRFPDQRSDYEQSEPATYINSPLVGALAYLAHSFGQL* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0147 505 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 471 489 IPR033126 -
Gso10g0147 505 SUPERFAMILY Six-hairpin glycosidases 39 503 IPR008928 GO:0005975
Gso10g0147 505 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 398 424 IPR018221 -
Gso10g0147 505 Pfam Glycosyl hydrolase family 9 42 495 IPR001701 GO:0004553|GO:0005975
Gso10g0147 505 Gene3D - 38 505 IPR012341 GO:0005975
Gso10g0147 505 PANTHER ENDO-1,4-BETA-GLUCANASE 8 505 - -
Gso10g0147 505 PANTHER ENDOGLUCANASE 17 8 505 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0147 Gso-Chr10 1533514 1536364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0147 7 501 Glycoside Hydrolase AT1G02800 74.251 0.0 762
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0147 K01179 - gmx:100789144 992.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0141 2 1456377 1459269 Gso10g0147 10 1533514 1536364 GST
Gso3g1822 3 43875135 43877763 Gso10g0147 10 1533514 1536364 PCT
Gso10g0147 10 1533514 1536364 Gso3g1822 3 43875135 43877763 PCT