Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0141 ATGACTTTCTCCCTTTCATTCACCACTCTGCTTTCCCTTCTCTCTGTCATTCTGCTTCATGTCAATGCCTTCCCCGTTCATTTCAATCACCCCATACACCATCGCCACCCTCGCTTTGCCGCTCATAACTACAGAGACGCTCTCACCAAATCCATTCTCTTCTTTGAAGGCCAGAGGTCAGGGAAGCTCCCTCCTAACCAGAGAATGTCTTGGAGGAGAGACTCTGGCCTCTCTGATGGCTCTGCCATGCATGTTGATTTGGTTGGAGGGTACTATGATGCTGGGGACAATGTGAAATTTGGTTTTCCCATGGCATTCACCACCACCATGCTTTCATGGAGCGTTATTGAGTTTGGTGGCCTAATGAAAGGTGAGTTGCAGAATGCCAGAGAGGCCATTCGCTGGGGCACTGATTATCTTCTCAAAGCCACTGCACATCCAAACACCATTTATGTTCAGGTGGGGGATGCTAAGAAGGACCATGCTTGTTGGGAGAGACCAGAGGACATGGATACTCCAAGAAGCGTGTTTAAAATAGATGCAAACACACCTGGTTCAGAAGTTGCCGCAGAAACTGCTGCAGCTCTTGCAGCTGCTTCTCTGGTTTTTAGAAGAAGTGACCCCACATACTCCAAAATTTTAGTCAGGAGAGCCATCAGGGTTTTCCAGTTTGCTGATAAGTACAGGGGATCCTACAGCAATGCCTTGAAACCTTATGTGTGCCCCTTCTACTGCTCTTACTCTGGATATCAGGATGAGCTGTTGTGGGGTGCTGCCTGGCTGCACAAGGCTACCAAGAATCCAATGTACCTAAACTACATCAAAGTTAATGGCCAGATCCTTGGGGCTGCAGAGTTTGACAACACCTTTGGGTGGGATAACAAGCATGCTGGAGCAAGAATACTTCTTTCCAAGGAATTCCTGGTTCAAAGGGTACAATCCCTCCATGACTACAAGGGGCATGCGGACAATTTCGTCTGTTCCCTAATTTCTGGGACCTCTTTGTCTTCCACCCAATATACCCCAGGTGGCCTTCTTTTCAAGATGAGTGATAGCAACATGCAGTATGTCACATCCACCTCCTTCCTACTGCTAACATATGCCAAATACTTGACCCAATCCCATATGCTTGTTAACTGTGGCGGAATCACCGTAACCCCAAGGAGACTCCGGACAATAGCTAAGAAACAGGTGGATTACTTGCTTGGAGACAACCCATTGAAGATGTCATACATGGTGGGGTATGGTCCACGGTACCCACGAAGGATACACCATAGGGGCTCATCTCTACCGTCGATTGCTGTACACCCGGGAAAGATCCAGTGTTCCGCAGGGTTCAGTGTGATGAATTCGCAATCCCCCAACCCAAACATTCTCGTGGGGGCCATTGTTGGTGGACCAGATCGGCATGATAGGTTCCCAGATCAACGGTCAGATTATGAGCAATCGGAGCCAGCTACATACATTAACTCACCCCTTGTAGGAGCACTGGCCTATCTTGCACACTCATTTGGTCAACTCTAG 1524 0.4836 MTFSLSFTTLLSLLSVILLHVNAFPVHFNHPIHHRHPRFAAHNYRDALTKSILFFEGQRSGKLPPNQRMSWRRDSGLSDGSAMHVDLVGGYYDAGDNVKFGFPMAFTTTMLSWSVIEFGGLMKGELQNAREAIRWGTDYLLKATAHPNTIYVQVGDAKKDHACWERPEDMDTPRSVFKIDANTPGSEVAAETAAALAAASLVFRRSDPTYSKILVRRAIRVFQFADKYRGSYSNALKPYVCPFYCSYSGYQDELLWGAAWLHKATKNPMYLNYIKVNGQILGAAEFDNTFGWDNKHAGARILLSKEFLVQRVQSLHDYKGHADNFVCSLISGTSLSSTQYTPGGLLFKMSDSNMQYVTSTSFLLLTYAKYLTQSHMLVNCGGITVTPRRLRTIAKKQVDYLLGDNPLKMSYMVGYGPRYPRRIHHRGSSLPSIAVHPGKIQCSAGFSVMNSQSPNPNILVGAIVGGPDRHDRFPDQRSDYEQSEPATYINSPLVGALAYLAHSFGQL* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0141 507 PANTHER ENDOGLUCANASE 17 14 507 - -
Gso2g0141 507 SUPERFAMILY Six-hairpin glycosidases 41 505 IPR008928 GO:0005975
Gso2g0141 507 Gene3D - 40 507 IPR012341 GO:0005975
Gso2g0141 507 Pfam Glycosyl hydrolase family 9 44 497 IPR001701 GO:0004553|GO:0005975
Gso2g0141 507 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 400 426 IPR018221 -
Gso2g0141 507 PANTHER ENDO-1,4-BETA-GLUCANASE 14 507 - -
Gso2g0141 507 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 473 491 IPR033126 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0141 Gso-Chr2 1456377 1459269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0141 1 503 Glycoside Hydrolase AT1G02800 75.397 0.0 775
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0141 K01179 - gmx:100777718 1009.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0141 2 1456377 1459269 Gso2g0141 2 1456377 1459269 ECH
Gso2g0141 2 1456377 1459269 Gso10g0147 10 1533514 1536364 GST
Gso3g1822 3 43875135 43877763 Gso2g0141 2 1456377 1459269 PCT
Gso2g0141 2 1456377 1459269 Gso3g1822 3 43875135 43877763 PCT