Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1778 ATGGGAGCGGTAACTGTTGGTGAATTGAAGCCCAGCATTTCAGGAAAAAGGACCTTTCGTCCAAGTTCAAGTATAAGACATGCCACTGAATGGCCGATATCTGATGTATCTAGCGATCTTACCATCGAAGTAGGAGCATCAACCTTCGCACTTCACAAGTTTCCTCTGGTTTCTCGGAGTGGAAGAATTCGGAAGCTGCTGTTAGATGCAAAAGATTCAAAAGTTTTACGCATAAGTCTCCCAAATGTGCCAGGTGGTGCAGAGGCATTTGAGCTAGCTTCCAAGTTTTGCTATGGAATCAATGTTGAGTTCACCCTCTCAAATGTGGCCTTGCTACGTTGCGCGGCCCATTTTCTTGAAATGACCGAAGAATTCGCTGAAAAAAACTTGGAGGCCAGAGCTGAAGCATATCTAAGGGACACAGTGCTCCCTAACATATCAAGCACAGTACATGTTCTTCACTGTTGTGAGGCTCTTCGTCCCATATCTGAACAAATAAACCTTGTCAACAAGCTAATCAACGCAATTGCGAACAACGCGTGCAAAGAACAGCTTACAACTGGTCTACTAAAACTAGATCACACTTTCCCTTCTAAAACCACACCAACCATGGAGCCAGAAACACCCTCAGATTGGTGGGGGAAGTCTTTCAATGTTCTTAGTCTTGAGTTCTTCCAACGAGTTGTGTCTGTTGTGAAGTCAAAGGGACTAAAACAAGACATGATCAGCAAGATTTTGATGAACTATGCCCATGGTTCTCTTCAAGGGATTGGTGTTAGAGACCCTCAAGTGGTGAAGGGAAGTCTTCATGACTTGGAATTTCAAAAGAAACAAAGGGTGGTTGTTGAAACCATTGTTGGTTTACTCCCAACTCACTCGAGGAAAAGCCCGGTTCCAATGGGATTCCTCTCTAGTTTGTTGAAGGGTGCAATAGCAGCATCTGCATCAACTCCTTGTAAATCTGATTTGGAGAGGAGAATTAGTCTGCAACTTGACCAGGCCATTCTTGAAGACATCTTGATCCCAACAAACTCACCTCAAAACTCCCATAACACAATGTATGACACAGACTCAATTCTGAGGATCTTCTCTATTTATCTAAACATGGACGAGGAGGATGGCGAAGATAGTGACAACTACATTGATGAGAGCCAAATGGTGTATGATTTTGACAGTCCTGGATCTCCTAAACAAAGCTCAATCATAAAGGTATCCAAATTGCTGGACAATTATCTCGCGGAAGTAGCACTAGACTCAAACTTGTTGCCTTCAAAATTCACAGCACTTGCAGAACTGCTTCCAGATCATGCACGTGTGGTTAGTGATGGACTCTATAGAGCTGTTGACATCTTCCTTAAGGTTCATCCAAACATGAAGGACCCAGAGAGGAACCGGCTATGCAAAACCATTGATTGTCAGAAACTGTCTCAAGAAGCATGCAGCCATGCAGCACAGAACGAAAGGCTACCGGTGCAGATGGTGGTTCAAGTTCTTTACTTCGAGCAAATGAGGCTTCGCAATGCCATGAATGGAGGGCACAACCAACTCTTCTTTGGTCAGTTCCCTCACCGTTCAGGGAGTGGTGCAGGGAGTGGAGCCATTTCCCCAAGAGATAACTATGCATCTGTTAGAAGAGAGAACAGAGAACTGAAGCTTGAAGTTGCAAGAATGAGAATGAGGCTCACTGACTTGGAGAAAGACCACGTGTCCATGAAGCAGGAGCTTGTTAAGTCTCACCCTGCCAACAAGTTGTTCAAATCATTCACCAGAAAGCTGAGCAAGCTAAATTCTCTATTCAGGATAAATAGCATTAAGCCACTTATTGGTGGCAAAGCTAGTTCAGAAACTCGCTTCCCTTTTCCAAAGCGAAGACGCCACTCCGTTTCATGA 1890 0.4423 MGAVTVGELKPSISGKRTFRPSSSIRHATEWPISDVSSDLTIEVGASTFALHKFPLVSRSGRIRKLLLDAKDSKVLRISLPNVPGGAEAFELASKFCYGINVEFTLSNVALLRCAAHFLEMTEEFAEKNLEARAEAYLRDTVLPNISSTVHVLHCCEALRPISEQINLVNKLINAIANNACKEQLTTGLLKLDHTFPSKTTPTMEPETPSDWWGKSFNVLSLEFFQRVVSVVKSKGLKQDMISKILMNYAHGSLQGIGVRDPQVVKGSLHDLEFQKKQRVVVETIVGLLPTHSRKSPVPMGFLSSLLKGAIAASASTPCKSDLERRISLQLDQAILEDILIPTNSPQNSHNTMYDTDSILRIFSIYLNMDEEDGEDSDNYIDESQMVYDFDSPGSPKQSSIIKVSKLLDNYLAEVALDSNLLPSKFTALAELLPDHARVVSDGLYRAVDIFLKVHPNMKDPERNRLCKTIDCQKLSQEACSHAAQNERLPVQMVVQVLYFEQMRLRNAMNGGHNQLFFGQFPHRSGSGAGSGAISPRDNYASVRRENRELKLEVARMRMRLTDLEKDHVSMKQELVKSHPANKLFKSFTRKLSKLNSLFRINSIKPLIGGKASSETRFPFPKRRRHSVS* 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1778 629 Coils Coil 540 574 - -
Gso3g1778 629 SUPERFAMILY POZ domain 22 123 IPR011333 -
Gso3g1778 629 ProSiteProfiles BTB domain profile. 38 106 IPR000210 GO:0005515
Gso3g1778 629 Pfam NPH3 family 211 480 IPR027356 -
Gso3g1778 629 Gene3D Potassium Channel Kv1.1; Chain A 26 142 IPR011333 -
Gso3g1778 629 ProSiteProfiles NPH3 domain profile. 211 504 IPR027356 -
Gso3g1778 629 Pfam BTB/POZ domain 37 123 IPR000210 GO:0005515
Gso3g1778 629 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN SETH6 25 622 - -
Gso3g1778 629 PANTHER OS12G0117600 PROTEIN 25 622 IPR043454 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1778 Gso-Chr3 43540489 43544919 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1778 1 454 EF-hand Containing Proteins AT2G47860 58.351 0.0 538
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1778 - - gmx:100776688 1221.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1744 19 46298848 46303433 Gso3g1778 3 43540489 43544919 GST
Gso3g1778 3 43540489 43544919 Gso2g1273 2 15777217 15782332 PCT
Gso3g1778 3 43540489 43544919 Gso10g0180 10 1885717 1890801 PCT
Gso2g1273 2 15777217 15782332 Gso3g1778 3 43540489 43544919 PCT
Gso10g0180 10 1885717 1890801 Gso3g1778 3 43540489 43544919 PCT